HMGB5 (Arabidopsis thaliana)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 AT4G35570 T326484_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Cannot be phosphorylated by CK2alpha.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY

RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.550 0.594
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT4G35570.1 Sox 34 103
AT4G35570.2 Sox 34 103

Links

Other Sox family TFs
Other Arabidopsis thaliana TFs

222 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.681
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.672
Carubv10005973m.g Capsella rubella Carubv10005973m.g I 0.628
Cagra.2350s0098 Capsella grandiflora Cagra.2350s0098 I 0.628
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.610
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.610
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.610
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.610
HMGB4 Arabidopsis thaliana AT2G17560 I 0.598
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.595
Bra037266 Brassica rapa Bra037266 I 0.595
Bra011624 Brassica rapa Bra011624 I 0.591
Bra017723 Brassica rapa Bra017723 I 0.591
Bo7g117500 Brassica oleracea Bo7g117500 I 0.591
Bo1g006360 Brassica oleracea Bo1g006360 I 0.591
Bra002073 Brassica rapa Bra002073 I 0.570
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.569
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.566
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.550
HMG-1 Pisum sativum Q41026_PEA D 0.550
PK29786.1 Cannabis sativa PK29786.1 I 0.547
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.546
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.544
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.541
Bo7g014280 Brassica oleracea Bo7g014280 I 0.541
Cla023817 Citrullus lanatus Cla023817 I 0.540
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.540
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.540
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.531
HMGB1 Arabidopsis thaliana AT3G51880 I 0.531
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.531
Bo7g101270 Brassica oleracea Bo7g101270 I 0.531
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.531
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.531
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.529
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.528
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.528
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.528
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.528
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.528
HMGB2 Arabidopsis thaliana AT1G20693 I 0.528
mgf009330m Mimulus guttatus mgf009330m I 0.527
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.524
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.524
mgf016363m Mimulus guttatus mgf016363m I 0.521
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.519
Bo8g081200 Brassica oleracea Bo8g081200 I 0.519
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.518
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.516
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.516
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.515
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.515
Pm002934 Prunus mume Pm002934 I 0.515
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.515
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.515
Ca_04825 Cicer arietinum Ca_04825 I 0.513
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.512
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.512
Pm026798 Prunus mume Pm026798 I 0.512
Ca_19340 Cicer arietinum Ca_19340 I 0.512
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.512
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.511
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.509
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.508
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.508
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.508
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.508
MDP0000607529 Malus domestica MDP0000607529 I 0.508
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.507
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.507
OS06G0728000 Oryza sativa OS06G0728000 I 0.506
TCM_000068 Theobroma cacao TCM_000068 I 0.506
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.506
Si007288m.g Setaria italica Si007288m.g I 0.506
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.506
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.506
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.506
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.506
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.506
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.506
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.506
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.506
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.506
OBART06G28090 Oryza barthii OBART06G28090 I 0.506
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.505
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.505
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.505
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.505
OB01G34910 Oryza brachyantha OB01G34910 I 0.501
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.501
Ca_09896 Cicer arietinum Ca_09896 I 0.500
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.499
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.499
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.499
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.499
Ca_05351 Cicer arietinum Ca_05351 I 0.499
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.499
OB06G35870 Oryza brachyantha OB06G35870 I 0.499
Cla009093 Citrullus lanatus Cla009093 I 0.499
Bo8g070350 Brassica oleracea Bo8g070350 I 0.497
Bo7g061420 Brassica oleracea Bo7g061420 I 0.497
mgf014518m Mimulus guttatus mgf014518m I 0.495
Bra025838 Brassica rapa Bra025838 I 0.495
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.495
HMGB3 Arabidopsis thaliana AT1G20696 I 0.495
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.495
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.495
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.495
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.495
PK11149.1 Cannabis sativa PK11149.1 I 0.494
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.493
F775_27510 Aegilops tauschii F775_27510 I 0.493
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.493
Ca_10725 Cicer arietinum Ca_10725 I 0.489
MTR_7g082820 Medicago truncatula MTR_7g082820 I 0.489
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.487
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.487
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.487
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.487
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.487
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.487
MDP0000275042 Malus domestica MDP0000275042 I 0.484
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.483
mgf006113m Mimulus guttatus mgf006113m I 0.482
mgf008076m Mimulus guttatus mgf008076m I 0.482
TCM_021706 Theobroma cacao TCM_021706 I 0.482
mgf016608m Mimulus guttatus mgf016608m I 0.482
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.481
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.481
29701.m000600 Ricinus communis 29701.m000600 I 0.481
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.479
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.478
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.478
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.478
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.477
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.477
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.475
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.474
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.473
29669.m000844 Ricinus communis 29669.m000844 I 0.473
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.472
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.472
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.472
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.472
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.472
Cla018386 Citrullus lanatus Cla018386 I 0.472
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.472
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.472
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.472
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.471
Bo5g030580 Brassica oleracea Bo5g030580 I 0.467
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.466
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.466
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.466
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.466
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.466
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.466
MDP0000757111 Malus domestica MDP0000757111 I 0.466
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.466
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.466
MDP0000362980 Malus domestica MDP0000362980 I 0.466
TCM_034406 Theobroma cacao TCM_034406 I 0.466
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.466
Pm018913 Prunus mume Pm018913 I 0.466
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.466
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.466
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.465
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.462
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.462
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.457
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.457
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.456
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.456
30170.m014386 Ricinus communis 30170.m014386 I 0.456
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.456
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.456
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.453
Si031512m.g Setaria italica Si031512m.g I 0.453
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.453
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.453
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.451
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.451
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.450
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.450
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.450
OS09G0551600 Oryza sativa OS09G0551600 I 0.450
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.450
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.449
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.445
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.445
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.445
OB09G25530 Oryza brachyantha OB09G25530 I 0.444
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.444
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.444
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.444
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.441
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.439
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.439
PDK_20s1434871g001 Phoenix dactylifera PDK_20s1434871g001 I 0.438
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.438
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.435
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.432
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.432
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.432
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.432
TCM_042534 Theobroma cacao TCM_042534 I 0.431
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.427
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.426
BOTBODRAFT_30512 Botryobasidium botryosum BOTBODRAFT_30512 N 0.426
F775_05073 Aegilops tauschii F775_05073 I 0.426
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.423
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.423
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.423
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.423
OS01G0666200 Oryza sativa OS01G0666200 N 0.423
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.423
OBART01G25720 Oryza barthii OBART01G25720 N 0.423
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.423
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.422
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.416
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.415