CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HMGB12
(
Arabidopsis thaliana
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
AT5G23405
T326485_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT5G23405.1
Sox
63
129
STTSLTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTEDEKKDYLDKAADEEDEDEDTVEE
AT5G23405.2
Sox
62
128
STTSLTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTEDEKKDYLDKAADEEDEDEDTVEE
AT5G23405.3
Sox
62
128
STTSLTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTEDEKKDYLDKAADEEDEDEDTVEE
Links
Other
Sox
family TFs
Other
Arabidopsis thaliana
TFs
2 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
scaffold_602412.1
Arabidopsis lyrata
scaffold_602412.1
N
0.444