HMGB7 (Arabidopsis thaliana)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 AT5G23420 T326486_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins. Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G23420.1 Sox 115 183

Links

Other Sox family TFs
Other Arabidopsis thaliana TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
scaffold_602413.1 Arabidopsis lyrata scaffold_602413.1 N 0.741
Bra026498 Brassica rapa Bra026498 I 0.605
Bo9g014140 Brassica oleracea Bo9g014140 I 0.605
fgenesh2_kg.6__1935__AT5G23420.1 Arabidopsis lyrata fgenesh2_kg.6__1935__AT5G23420.1 N 0.601
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.594
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.594
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.567
Bra029371 Brassica rapa Bra029371 I 0.534
Bo2g160920 Brassica oleracea Bo2g160920 I 0.534
Cla009222 Citrullus lanatus Cla009222 I 0.517
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.517
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.515
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.504
mgf009124m Mimulus guttatus mgf009124m N 0.504
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.504
Pm006054 Prunus mume Pm006054 I 0.498
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.498
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.487
OB08G10120 Oryza brachyantha OB08G10120 N 0.480
MDP0000205665 Malus domestica MDP0000205665 I 0.479
TCM_007659 Theobroma cacao TCM_007659 I 0.470
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.468
30131.m007272 Ricinus communis 30131.m007272 I 0.465
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.464
OBART08G00070 Oryza barthii OBART08G00070 I 0.462
OS08G0101100 Oryza sativa OS08G0101100 I 0.462
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.462
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.462
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.462
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.462
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.462
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.462
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.462
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.461
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.458
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.454
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.450
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.449
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.447
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.431
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.426
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.417