CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HMGB7
(
Arabidopsis thaliana
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
AT5G23420
T326486_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT5G23420.1
Sox
115
183
PKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSLESND
Links
Other
Sox
family TFs
Other
Arabidopsis thaliana
TFs
42 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
scaffold_602413.1
Arabidopsis lyrata
scaffold_602413.1
N
0.741
Bra026498
Brassica rapa
Bra026498
I
0.605
Bo9g014140
Brassica oleracea
Bo9g014140
I
0.605
fgenesh2_kg.6__1935__AT5G23420.1
Arabidopsis lyrata
fgenesh2_kg.6__1935__AT5G23420.1
N
0.601
Cagra.0086s0060
Capsella grandiflora
Cagra.0086s0060
I
0.594
Carubv10001858m.g
Capsella rubella
Carubv10001858m.g
I
0.594
Bostr.10199s0131
Boechera stricta
Bostr.10199s0131
N
0.567
Bra029371
Brassica rapa
Bra029371
I
0.534
Bo2g160920
Brassica oleracea
Bo2g160920
I
0.534
Cla009222
Citrullus lanatus
Cla009222
I
0.517
Cucsa.300030
Cucumis sativus
Cucsa.300030
I
0.517
Thhalv10004817m.g
Eutrema salsugineum
Thhalv10004817m.g
N
0.515
orange1.1g026850m.g
Citrus sinensis
orange1.1g026850m.g
N
0.504
mgf009124m
Mimulus guttatus
mgf009124m
N
0.504
Ciclev10016587m.g
Citrus clementina
Ciclev10016587m.g
N
0.504
Pm006054
Prunus mume
Pm006054
I
0.498
PRUPE_ppa026912mg
Prunus persica
PRUPE_ppa026912mg
I
0.498
SapurV1A.0766s0120
Salix purpurea
SapurV1A.0766s0120
I
0.487
OB08G10120
Oryza brachyantha
OB08G10120
N
0.480
MDP0000205665
Malus domestica
MDP0000205665
I
0.479
TCM_007659
Theobroma cacao
TCM_007659
I
0.470
HMGB6
Vitis vinifera
VIT_10s0071g00870
I
0.468
30131.m007272
Ricinus communis
30131.m007272
I
0.465
Lus10041009.g
Linum usitatissimum
Lus10041009.g
N
0.464
OBART08G00070
Oryza barthii
OBART08G00070
I
0.462
OS08G0101100
Oryza sativa
OS08G0101100
I
0.462
BGIOSGA027814
Oryza indica
BGIOSGA027814
I
0.462
BGIOSGA027819
Oryza indica
BGIOSGA027819
I
0.462
OGLUM08G00090
Oryza glumaepatula
OGLUM08G00090
I
0.462
OPUNC08G00150
Oryza punctata
OPUNC08G00150
I
0.462
ONIVA08G00070
Oryza nivara
ONIVA08G00070
I
0.462
ORUFI08G00080
Oryza rufipogon
ORUFI08G00080
I
0.462
OLONG_014445
Oryza longistaminata
OLONG_014445
I
0.462
Gorai.008G147700
Gossypium raimondii
Gorai.008G147700
I
0.461
PGSC0003DMG400025304
Solanum tuberosum
PGSC0003DMG400025304
I
0.458
cassava1392.valid.m1
Manihot esculenta
cassava1392.valid.m1
I
0.454
PDK_20s1355261g001
Phoenix dactylifera
PDK_20s1355261g001
N
0.450
HMGB6
Populus trichocarpa
POPTR_0007s15320
I
0.449
AMTR_s00171p00070550
Amborella trichopoda
AMTR_s00171p00070550
I
0.447
GRMZM2G125648
Zea mays
GRMZM2G125648
N
0.431
Eucgr.J00336
Eucalyptus grandis
Eucgr.J00336
I
0.426
GSMUA_AchrUn_randomG05290_001
Musa acuminata
GSMUA_AchrUn_randomG05290_001
I
0.417