BGIOSGA008782 (Oryza indica)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 BGIOSGA008782 T326587_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
BGIOSGA008782-PA Sox 33 102

Links

Other Sox family TFs
Other Oryza indica TFs

210 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ONIVA02G29880 Oryza nivara ONIVA02G29880 N 0.741
OPUNC02G25020 Oryza punctata OPUNC02G25020 N 0.741
OMERI02G26620 Oryza meridionalis OMERI02G26620 N 0.741
OGLUM02G27900 Oryza glumaepatula OGLUM02G27900 N 0.741
OB02G34710 Oryza brachyantha OB02G34710 N 0.741
OBART02G27340 Oryza barthii OBART02G27340 N 0.741
ORUFI02G28820 Oryza rufipogon ORUFI02G28820 N 0.741
OS02G0670400 Oryza sativa OS02G0670400 N 0.741
BRADI3G51140 Brachypodium distachyon BRADI3G51140 N 0.737
LPERR02G22240 Leersia perrieri LPERR02G22240 N 0.729
GRMZM2G013821 Zea mays GRMZM2G013821 N 0.724
Si018635m.g Setaria italica Si018635m.g N 0.722
Pavir.J38684 Panicum virgatum Pavir.J38684 N 0.699
Pavir.J40489 Panicum virgatum Pavir.J40489 N 0.699
Sb04g032180 Sorghum bicolor Sb04g032180 N 0.691
Traes_6DL_E5B5F44FC Triticum aestivum Traes_6DL_E5B5F44FC I 0.672
Traes_6BL_017F7FCF8 Triticum aestivum Traes_6BL_017F7FCF8 I 0.672
TRIUR3_34670 Triticum urartu TRIUR3_34670 I 0.672
Traes_6AL_9EC9874F1 Triticum aestivum Traes_6AL_9EC9874F1 I 0.672
F775_30706 Aegilops tauschii F775_30706 I 0.672
GRMZM2G156785 Zea mays GRMZM2G156785 N 0.660
GSMUA_Achr5G11630_001 Musa acuminata GSMUA_Achr5G11630_001 I 0.632
MLOC_57633 Hordeum vulgare MLOC_57633 I 0.617
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.597
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.544
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.534
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.513
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.513
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.511
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.508
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.507
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.507
OLONG_000335 Oryza longistaminata OLONG_000335 N 0.505
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.501
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.501
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.500
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.500
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.498
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.495
Bo5g030580 Brassica oleracea Bo5g030580 I 0.494
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.492
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.491
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.490
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.490
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.490
TCM_034406 Theobroma cacao TCM_034406 I 0.490
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.490
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.490
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.490
30170.m014386 Ricinus communis 30170.m014386 I 0.490
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.490
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.490
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.490
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.490
Cla009093 Citrullus lanatus Cla009093 I 0.490
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.490
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.490
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.490
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.490
MDP0000275042 Malus domestica MDP0000275042 I 0.490
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.490
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.490
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.490
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.488
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.481
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.480
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.480
MDP0000757111 Malus domestica MDP0000757111 I 0.480
MDP0000362980 Malus domestica MDP0000362980 I 0.480
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.480
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.480
Pm018913 Prunus mume Pm018913 I 0.480
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.480
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.480
29669.m000844 Ricinus communis 29669.m000844 I 0.478
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.477
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.474
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.474
TCM_000068 Theobroma cacao TCM_000068 I 0.473
Cla018386 Citrullus lanatus Cla018386 I 0.470
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.470
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.469
Bo8g070350 Brassica oleracea Bo8g070350 I 0.469
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.469
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.469
Bo7g061420 Brassica oleracea Bo7g061420 I 0.469
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.469
F775_27510 Aegilops tauschii F775_27510 I 0.468
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.468
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.468
OB06G35870 Oryza brachyantha OB06G35870 I 0.468
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.468
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.468
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.468
TCM_042534 Theobroma cacao TCM_042534 I 0.467
Bra025838 Brassica rapa Bra025838 I 0.467
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.466
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.466
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.464
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.464
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.464
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.464
TCM_021706 Theobroma cacao TCM_021706 I 0.464
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.463
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.463
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.461
OS06G0728000 Oryza sativa OS06G0728000 I 0.461
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.461
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.461
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.461
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.461
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.461
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.461
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.461
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.461
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.461
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.461
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.461
Pm026798 Prunus mume Pm026798 I 0.461
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.461
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.461
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.461
OBART06G28090 Oryza barthii OBART06G28090 I 0.461
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.461
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.461
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.461
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.461
Si031512m.g Setaria italica Si031512m.g I 0.461
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.461
HMGB3 Arabidopsis thaliana AT1G20696 I 0.461
Si007288m.g Setaria italica Si007288m.g I 0.461
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.461
PK11149.1 Cannabis sativa PK11149.1 I 0.457
mgf009330m Mimulus guttatus mgf009330m I 0.456
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.454
mgf014518m Mimulus guttatus mgf014518m I 0.452
MDP0000607529 Malus domestica MDP0000607529 I 0.452
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.451
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.451
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.451
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.451
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.449
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.449
Ca_09896 Cicer arietinum Ca_09896 I 0.448
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.447
Pm002934 Prunus mume Pm002934 I 0.447
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.444
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.443
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.443
mgf006113m Mimulus guttatus mgf006113m I 0.440
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.440
mgf016608m Mimulus guttatus mgf016608m I 0.440
mgf008076m Mimulus guttatus mgf008076m I 0.440
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.439
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.437
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.437
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.437
Cla023817 Citrullus lanatus Cla023817 I 0.437
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.437
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.437
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.437
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.437
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.437
Ca_10725 Cicer arietinum Ca_10725 I 0.436
GRMZM2G144398 Zea mays GRMZM2G144398 N 0.434
AC186524.3_FG005 Zea mays AC186524.3_FG005 N 0.433
mgf000913m Mimulus guttatus mgf000913m I 0.433
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.432
OB09G25530 Oryza brachyantha OB09G25530 I 0.432
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.432
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.432
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.432
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.432
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.431
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.431
Ca_19340 Cicer arietinum Ca_19340 I 0.430
mgf016363m Mimulus guttatus mgf016363m I 0.430
PK29786.1 Cannabis sativa PK29786.1 I 0.430
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.430
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.428
OS09G0551600 Oryza sativa OS09G0551600 I 0.425
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.425
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.425
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.425
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.425
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.425
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.422
Bo7g014280 Brassica oleracea Bo7g014280 I 0.422
Bra037266 Brassica rapa Bra037266 I 0.422
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.421
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.420
Pavir.Gb00881 Panicum virgatum Pavir.Gb00881 N 0.419
Pavir.Ga01019 Panicum virgatum Pavir.Ga01019 N 0.419
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.418
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.418
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.418
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.418
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.418
SNAPOd2T00000370001 Oikopleura dioica SNAPOd2T00000370001 N 0.418
GRMZM2G145968 Zea mays GRMZM2G145968 N 0.418
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.418
HMGB2 Arabidopsis thaliana AT1G20693 I 0.418
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.418
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.418
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.418
HMGB4 Arabidopsis thaliana AT2G17560 I 0.416
OESDEN_24828 Oesophagostomum dentatum OESDEN_24828 N 0.415
HCOI01913300 Haemonchus contortus HCOI01913300 I 0.415
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.415
HCOI01912600 Haemonchus contortus HCOI01912600 I 0.415