BGIOSGA027819 (Oryza indica)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 BGIOSGA027819 T326597_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY

RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.422 0.552
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BGIOSGA027819-PA Sox 92 159

Links

Other Sox family TFs
Other Oryza indica TFs

240 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.741
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.741
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.741
OS08G0101100 Oryza sativa OS08G0101100 I 0.741
OBART08G00070 Oryza barthii OBART08G00070 I 0.741
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.741
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.741
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.741
OB08G10120 Oryza brachyantha OB08G10120 N 0.695
MDP0000205665 Malus domestica MDP0000205665 I 0.640
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.634
Pm006054 Prunus mume Pm006054 I 0.629
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.629
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.628
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.614
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.614
LPERR08G00140 Leersia perrieri LPERR08G00140 N 0.610
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.601
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.598
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.596
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.596
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.586
TCM_007659 Theobroma cacao TCM_007659 I 0.582
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.576
Si014434m.g Setaria italica Si014434m.g N 0.569
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.566
Bo2g160920 Brassica oleracea Bo2g160920 I 0.563
Bra029371 Brassica rapa Bra029371 I 0.563
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.557
PK03866.1 Cannabis sativa PK03866.1 I 0.551
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.546
Cla009222 Citrullus lanatus Cla009222 I 0.546
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.545
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.538
30131.m007272 Ricinus communis 30131.m007272 I 0.533
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.524
fgenesh2_kg.6__1935__AT5G23420.1 Arabidopsis lyrata fgenesh2_kg.6__1935__AT5G23420.1 N 0.523
OESDEN_24828 Oesophagostomum dentatum OESDEN_24828 N 0.520
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.510
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.510
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.508
Traes_7AL_959534EDB Triticum aestivum Traes_7AL_959534EDB I 0.506
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.506
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.506
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.506
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.505
MLOC_77667 Hordeum vulgare MLOC_77667 I 0.504
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.500
Bra026498 Brassica rapa Bra026498 I 0.499
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.499
Bo9g014140 Brassica oleracea Bo9g014140 I 0.499
TCM_042534 Theobroma cacao TCM_042534 I 0.495
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.494
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.493
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.488
BRADI3G12920 Brachypodium distachyon BRADI3G12920 I 0.488
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.485
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.483
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.483
HCOI01912600 Haemonchus contortus HCOI01912600 I 0.483
HCOI01913300 Haemonchus contortus HCOI01913300 I 0.483
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.482
GD25013 Drosophila simulans FBgn0196325 N 0.474
GF12460 Drosophila ananassae FBgn0089497 N 0.474
Ssrp Drosophila melanogaster FBgn0010278 N 0.474
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.473
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.472
Pavir.Fb00026 Panicum virgatum Pavir.Fb00026 N 0.472
mgf009124m Mimulus guttatus mgf009124m N 0.471
GJ21774 Drosophila virilis FBgn0208892 N 0.469
GH21151 Drosophila grimshawi FBgn0128613 N 0.469
GG19998 Drosophila erecta FBgn0112197 N 0.469
GE11532 Drosophila yakuba FBgn0229332 N 0.469
ENSOGAG00000034481 Otolemur garnettii ENSOGAG00000034481 N 0.469
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.465
fgenesh1_pg.4_#_114 Coccomyxa subellipsoidea C169 fgenesh1_pg.4_#_114 N 0.464
fgeneshCV_pg.C_scaffold_4000123 Chlorella vulgaris fgeneshCV_pg.C_scaffold_4000123 N 0.464
HMEL015307 Heliconius melpomene HMEL015307 N 0.462
HMGB7 Arabidopsis thaliana AT5G23420 N 0.462
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.462
scaffold_602413.1 Arabidopsis lyrata scaffold_602413.1 N 0.462
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.462
Bo8g070350 Brassica oleracea Bo8g070350 I 0.461
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.461
HMGB3 Arabidopsis thaliana AT1G20696 I 0.461
Bo7g061420 Brassica oleracea Bo7g061420 I 0.461
Pm026798 Prunus mume Pm026798 I 0.461
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.461
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.461
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.461
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.461
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.461
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.461
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.457
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.457
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.457
ENSOGAG00000026034 Otolemur garnettii ENSOGAG00000026034 I 0.457
Bra025838 Brassica rapa Bra025838 I 0.456
29669.m000844 Ricinus communis 29669.m000844 I 0.456
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.456
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.455
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.455
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.455
mgf009330m Mimulus guttatus mgf009330m I 0.455
BGIBMGA005288 Bombyx mori BGIBMGA005288 N 0.453
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.450
PK14705.1 Cannabis sativa PK14705.1 I 0.449
Pm018913 Prunus mume Pm018913 I 0.449
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.449
MDP0000757111 Malus domestica MDP0000757111 I 0.449
MDP0000362980 Malus domestica MDP0000362980 I 0.449
SPRG_10438 Saprolegnia parasitica SPRG_10438 N 0.448
MDP0000607529 Malus domestica MDP0000607529 I 0.445
PPAI002521 Phlebotomus papatasi PPAI002521 N 0.445
LDEC020995 Leptinotarsa decemlineata LDEC020995 N 0.445
mgf016608m Mimulus guttatus mgf016608m I 0.443
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.443
mgf014518m Mimulus guttatus mgf014518m I 0.443
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.443
mgf006113m Mimulus guttatus mgf006113m I 0.443
Ca_09896 Cicer arietinum Ca_09896 I 0.443
mgf008076m Mimulus guttatus mgf008076m I 0.443
mgf000913m Mimulus guttatus mgf000913m I 0.443
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.443
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.443
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.443
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.443
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.443
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.443
MDOA007633 Musca domestica MDOA007633 N 0.442
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.441
TCM_000068 Theobroma cacao TCM_000068 I 0.441
GI18750 Drosophila mojavensis FBgn0141489 N 0.440
AAEL002381 Aedes aegypti AAEL002381 N 0.440
Cla018386 Citrullus lanatus Cla018386 I 0.439
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.439
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.439
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.439
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.439
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.439
Cla009093 Citrullus lanatus Cla009093 I 0.438
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.438
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.437
Ca_05351 Cicer arietinum Ca_05351 I 0.437
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.436
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.436
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.434
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.434
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.434
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.433
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.433
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.433
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.432
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.432
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.432
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.432
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.432
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.432
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.432
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.432
30170.m014386 Ricinus communis 30170.m014386 I 0.432
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.432
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.432
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.432
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.431
CPIJ020011 Culex quinquefasciatus CPIJ020011 I 0.430
KGM_13851 Danaus plexippus KGM_13851 N 0.430
CpipJ_CPIJ020011 Culex pipiens CpipJ_CPIJ020011 I 0.430
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.429
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.429
Bo5g030580 Brassica oleracea Bo5g030580 I 0.429
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.429
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.429
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.429
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.429
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.428
ENSMMUP00000037751 Macaca fascicularis ENSMMUP00000037751 N 0.428
HMGB1 Arabidopsis thaliana AT3G51880 I 0.428
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.428
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.428
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.428
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.427
MDP0000275042 Malus domestica MDP0000275042 I 0.427
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.427
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.427
Ssrp Drosophila pseudoobscura FBgn0078456 N 0.427
TCM_034406 Theobroma cacao TCM_034406 I 0.427
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.427
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.427
GL11071 Drosophila persimilis FBgn0148681 N 0.427
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.427
BRADI5G18460 Brachypodium distachyon BRADI5G18460 N 0.427
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.425
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.425
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.425
OB09G25530 Oryza brachyantha OB09G25530 I 0.425
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.425
Si031512m.g Setaria italica Si031512m.g I 0.425
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.425
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.425
Chro.20230 Cryptosporidium hominis Chro.20230 N 0.425
cgd2_2120 Cryptosporidium parvum cgd2_2120 N 0.425
Bo7g101270 Brassica oleracea Bo7g101270 I 0.424
Cflo_11824--XP_001120264.1_APIME Camponotus floridanus Cflo_11824--XP_001120264.1_APIME N 0.423
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.423
Hsal_00538--XP_001120264.1_APIME Harpegnathos saltator Hsal_00538--XP_001120264.1_APIME N 0.423
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.422
HMG-1 Pisum sativum Q41026_PEA D 0.422
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.421
YQE_02071 Dendroctonus ponderosae YQE_02071 N 0.421
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.421
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.421
ONIVA04G20340 Oryza nivara ONIVA04G20340 N 0.420
OPUNC04G19550 Oryza punctata OPUNC04G19550 N 0.420
ORGLA04G0188600 Oryza glaberrima ORGLA04G0188600 N 0.420
OGLUM04G21840 Oryza glumaepatula OGLUM04G21840 N 0.420
L798_13679 Zootermopsis nevadensis L798_13679 N 0.420
OB04G28810 Oryza brachyantha OB04G28810 N 0.420
OBART04G21800 Oryza barthii OBART04G21800 N 0.420
ORUFI04G23400 Oryza rufipogon ORUFI04G23400 N 0.420
OMERI04G18350 Oryza meridionalis OMERI04G18350 N 0.420
OS04G0564600 Oryza sativa OS04G0564600 N 0.420
BGIOSGA016928 Oryza indica BGIOSGA016928 N 0.420
ENSMEUG00000004078 Macropus eugenii ENSMEUG00000004078 N 0.419
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.418
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.418
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.418
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.418
HMGB2 Arabidopsis thaliana AT1G20693 I 0.418
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.418
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.418
OS09G0551600 Oryza sativa OS09G0551600 I 0.418
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.418
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.418
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.416
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.416
OSTLU_15773 Ostreococcus lucimarinus OSTLU_15773 N 0.416
Bo8g081200 Brassica oleracea Bo8g081200 I 0.416
ACEP16621 Atta cephalotes ACEP16621 N 0.416
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.415