Bo9g014140 (Brassica oleracea)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Bo9g014140 T326673_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.432 0.536
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo9g014140.1 Sox 126 194

Links

Other Sox family TFs
Other Brassica oleracea TFs

100 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra026498 Brassica rapa Bra026498 I 0.741
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.730
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.730
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.703
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.651
Bra029371 Brassica rapa Bra029371 I 0.636
Bo2g160920 Brassica oleracea Bo2g160920 I 0.636
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.619
Cla009222 Citrullus lanatus Cla009222 I 0.619
scaffold_602413.1 Arabidopsis lyrata scaffold_602413.1 N 0.605
HMGB7 Arabidopsis thaliana AT5G23420 N 0.605
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.600
Pm006054 Prunus mume Pm006054 I 0.600
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.589
MDP0000205665 Malus domestica MDP0000205665 I 0.581
TCM_007659 Theobroma cacao TCM_007659 I 0.572
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.569
30131.m007272 Ricinus communis 30131.m007272 I 0.566
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.563
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.560
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.556
mgf009124m Mimulus guttatus mgf009124m N 0.555
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.551
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.549
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.541
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.541
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.528
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.519
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.512
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.512
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.512
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.499
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.499
OS08G0101100 Oryza sativa OS08G0101100 I 0.499
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.499
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.499
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.499
fgenesh2_kg.6__1935__AT5G23420.1 Arabidopsis lyrata fgenesh2_kg.6__1935__AT5G23420.1 N 0.499
OBART08G00070 Oryza barthii OBART08G00070 I 0.499
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.499
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.499
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.495
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.495
Ca_05351 Cicer arietinum Ca_05351 I 0.492
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.487
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.485
PK03866.1 Cannabis sativa PK03866.1 I 0.484
OB08G10120 Oryza brachyantha OB08G10120 N 0.481
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.476
Bra009681 Brassica rapa Bra009681 N 0.476
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.473
Si014434m.g Setaria italica Si014434m.g N 0.473
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.472
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.469
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.468
AAEL011425 Aedes aegypti AAEL011425 I 0.467
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.463
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.463
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.463
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.463
Cflo_11824--XP_001120264.1_APIME Camponotus floridanus Cflo_11824--XP_001120264.1_APIME N 0.462
YQE_02071 Dendroctonus ponderosae YQE_02071 N 0.457
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.441
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.441
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.441
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.439
Cla018386 Citrullus lanatus Cla018386 I 0.439
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.438
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.433
CpipJ_CPIJ002953 Culex pipiens CpipJ_CPIJ002953 N 0.432
CPIJ002953 Culex quinquefasciatus CPIJ002953 N 0.432
CPIJ020011 Culex quinquefasciatus CPIJ020011 I 0.432
HMG-1 Pisum sativum Q41026_PEA D 0.432
CpipJ_CPIJ020011 Culex pipiens CpipJ_CPIJ020011 I 0.432
L798_13679 Zootermopsis nevadensis L798_13679 N 0.431
29600.m000548 Ricinus communis 29600.m000548 I 0.429
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.429
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.429
Hsal_00538--XP_001120264.1_APIME Harpegnathos saltator Hsal_00538--XP_001120264.1_APIME N 0.427
OSTLU_15773 Ostreococcus lucimarinus OSTLU_15773 N 0.424
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.423
LDEC020995 Leptinotarsa decemlineata LDEC020995 N 0.422
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.422
HMGB2 Arabidopsis thaliana AT1G20693 I 0.422
HMGB1 Arabidopsis thaliana AT3G51880 I 0.422
BGIBMGA005288 Bombyx mori BGIBMGA005288 N 0.422
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.422
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.422
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.422
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.422
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.422
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.422
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.422
HMEL015307 Heliconius melpomene HMEL015307 N 0.422
Ca_19340 Cicer arietinum Ca_19340 I 0.422
PPAI002521 Phlebotomus papatasi PPAI002521 N 0.420
Bo7g101270 Brassica oleracea Bo7g101270 I 0.418
GD25013 Drosophila simulans FBgn0196325 N 0.415
Ssrp Drosophila melanogaster FBgn0010278 N 0.415
GF12460 Drosophila ananassae FBgn0089497 N 0.415