CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra012244
(
Brassica rapa
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
Bra012244
T326700_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra012244.1-P
Sox
35
66
PKRPASAFFVFMEDFRQTYKKEHPDNKSVAAE
Links
Other
Sox
family TFs
Other
Brassica rapa
TFs
52 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra016455
Brassica rapa
Bra016455
N
0.737
GLYMA03G08270
Glycine max
GLYMA03G08270
I
0.602
GLYMA02G25940
Glycine max
GLYMA02G25940
N
0.564
XM_002306945.1
Populus trichocarpa
POPTR_0005s27390
I
0.561
orange1.1g029982m.g
Citrus sinensis
orange1.1g029982m.g
I
0.551
GRMZM2G144398
Zea mays
GRMZM2G144398
N
0.537
GLYMA01G28253
Glycine max
GLYMA01G28253
N
0.537
PPA10381
Pristionchus pacificus
PPA10381
N
0.528
Aquca_004_00335
Aquilegia coerulea
Aquca_004_00335
I
0.507
orange1.1g031906m.g
Citrus sinensis
orange1.1g031906m.g
I
0.494
SapurV1A.0491s0160
Salix purpurea
SapurV1A.0491s0160
N
0.493
GH23191
Drosophila grimshawi
FBgn0130648
N
0.493
ENSGMOG00000014613
Gadus morhua
ENSGMOG00000014613
N
0.492
PRUPE_ppa011596mg
Prunus persica
PRUPE_ppa011596mg
I
0.484
HBP1
Sorex araneus
ENSSARG00000007731
I
0.478
Ogr19131
Ophisaurus gracilis
Ogr19131
N
0.478
ENSMEUG00000011116
Macropus eugenii
ENSMEUG00000011116
I
0.478
Hbp1
Dipodomys ordii
ENSDORG00000010576
I
0.478
HBP1
Echinops telfairi
ENSETEG00000018542
I
0.478
HBP1
Homo sapiens
ENSG00000105856
D
0.478
Hbp1
Mus musculus
ENSMUSG00000002996
D
0.478
Ocbimv22007316m.g
Octopus bimaculoides
Ocbimv22007316m.g
N
0.472
AC186524.3_FG005
Zea mays
AC186524.3_FG005
N
0.465
e_gw1.88.21.1
Fragilariopsis cylindrus
e_gw1.88.21.1
N
0.464
H101_08199
Trichophyton interdigitale
H101_08199
N
0.462
PK25712.1
Cannabis sativa
PK25712.1
N
0.460
GRMZM2G324727
Zea mays
GRMZM2G324727
N
0.459
Traes_6DL_F46673879
Triticum aestivum
Traes_6DL_F46673879
N
0.455
SOX11
Ornithorhynchus anatinus
ENSOANG00000006361
N
0.452
PXEA_0001829801
Protopolystoma xenopodis
PXEA_0001829801
N
0.452
DAPPUDRAFT_346928
Daphnia pulex
DAPPUDRAFT_346928
N
0.452
ENSCPOG00000024750
Cavia porcellus
ENSCPOG00000024750
I
0.452
Sjc_0095610
Schistosoma japonicum
Sjc_0095610
N
0.451
CaO19.1730
Candida albicans
CaO19.1730
N
0.449
CaO19.9298
Candida albicans
CaO19.9298
N
0.449
Traes_1DL_ED7FDC748
Triticum aestivum
Traes_1DL_ED7FDC748
N
0.448
Minc03634
Meloidogyne incognita
Minc03634
N
0.447
Pavir.Ba01379
Panicum virgatum
Pavir.Ba01379
I
0.447
Minc04648
Meloidogyne incognita
Minc04648
N
0.447
GLYMA01G28820
Glycine max
GLYMA01G28820
I
0.446
GRMZM5G834758
Zea mays
GRMZM5G834758
I
0.445
BRADI1G29730
Brachypodium distachyon
BRADI1G29730
I
0.445
Si007288m.g
Setaria italica
Si007288m.g
I
0.445
GLYMA16G22060
Glycine max
GLYMA16G22060
I
0.444
ENSORLG00000018700
Oryzias latipes
ENSORLG00000018700
N
0.428
PredSwiss_ASS2010_3146.2
Pneumocystis carinii
PredSwiss_ASS2010_3146.2
N
0.422
SPOG_05006
Schizosaccharomyces cryophilus
SPOG_05006
N
0.422
SapurV1A.0248s0170
Salix purpurea
SapurV1A.0248s0170
I
0.421
GRMZM2G150348
Zea mays
GRMZM2G150348
N
0.421
SapurV1A.2780s0020
Salix purpurea
SapurV1A.2780s0020
I
0.419
RO3G_14677
Rhizopus oryzae
RO3G_14677
N
0.419
Traes_3AL_730255B9F
Triticum aestivum
Traes_3AL_730255B9F
I
0.416