Bra012832 (Brassica rapa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Bra012832 T326702_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bra012832.1-P Sox 50 80
Bra012832.1-P Sox 76 104

Links

Other Sox family TFs
Other Brassica rapa TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10035991.g Linum usitatissimum Lus10035991.g N 0.703
Lus10016695.g Linum usitatissimum Lus10016695.g N 0.689
Lus10013219.g Linum usitatissimum Lus10013219.g N 0.688
Lus10027787.g Linum usitatissimum Lus10027787.g N 0.660
OLONG_009629 Oryza longistaminata OLONG_009629 N 0.610
Ca_10726 Cicer arietinum Ca_10726 N 0.608
BGIOSGA031227 Oryza indica BGIOSGA031227 N 0.605
OGLUM09G19410 Oryza glumaepatula OGLUM09G19410 N 0.605
OBART09G18880 Oryza barthii OBART09G18880 N 0.605
OPUNC09G17310 Oryza punctata OPUNC09G17310 N 0.605
MDP0000699531 Malus domestica MDP0000699531 N 0.597
Cla010647 Citrullus lanatus Cla010647 N 0.595
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.592
Pm010381 Prunus mume Pm010381 N 0.556
PGSC0003DMG400001413 Solanum tuberosum PGSC0003DMG400001413 N 0.525
HelroG178674 Helobdella robusta HelroG178674 N 0.512
UCREL1_5722 Eutypa lata UCREL1_5722 N 0.504
Bo6g005800 Brassica oleracea Bo6g005800 N 0.499
JAAARDRAFT_460099 Jaapia argillacea JAAARDRAFT_460099 N 0.489
M407DRAFT_45069 Tulasnella calospora M407DRAFT_45069 N 0.486
PEQ_0000006801 Parascaris equorum PEQ_0000006801 N 0.486
BGIBMGA006156 Bombyx mori BGIBMGA006156 N 0.484
TSTA_110260 Talaromyces stipitatus TSTA_110260 N 0.476
MCOS_0000664501 Mesocestoides corti MCOS_0000664501 N 0.471
D917_04157 Trichinella nativa D917_04157 N 0.462
CLEC004367 Cimex lectularius CLEC004367 N 0.457
ASIS002444 Anopheles sinensis ASIS002444 N 0.457
EEL_0000370701 Elaeophora elaphi EEL_0000370701 N 0.451
fgenesh1_pg.C_scaffold_10000369 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_10000369 N 0.450
GPLIN_000170600 Globodera pallida GPLIN_000170600 N 0.441
sr12520 Sporisorium reilianum sr12520 N 0.441
SCHCODRAFT_105718 Schizophyllum commune SCHCODRAFT_105718 N 0.433
TCF7L2 Tursiops truncatus ENSTTRG00000002360 N 0.431
SAKL0C03916g Lachancea kluyveri SAKL0C03916g N 0.419
SAKL0C03872g Lachancea kluyveri SAKL0C03872g N 0.419
SAKL0D09922g Lachancea kluyveri SAKL0D09922g N 0.419