Bra016455 (Brassica rapa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Bra016455 T326704_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bra016455.1-P Sox 38 69

Links

Other Sox family TFs
Other Brassica rapa TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bra012244 Brassica rapa Bra012244 N 0.737
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.598
GLYMA02G25940 Glycine max GLYMA02G25940 N 0.560
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.557
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.547
GRMZM2G144398 Zea mays GRMZM2G144398 N 0.537
GLYMA01G28253 Glycine max GLYMA01G28253 N 0.537
PPA10381 Pristionchus pacificus PPA10381 N 0.528
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.503
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.499
GH23191 Drosophila grimshawi FBgn0130648 N 0.493
SapurV1A.0491s0160 Salix purpurea SapurV1A.0491s0160 N 0.493
ENSGMOG00000014613 Gadus morhua ENSGMOG00000014613 N 0.492
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.479
HBP1 Sorex araneus ENSSARG00000007731 I 0.478
ENSMEUG00000011116 Macropus eugenii ENSMEUG00000011116 I 0.478
Hbp1 Dipodomys ordii ENSDORG00000010576 I 0.478
HBP1 Echinops telfairi ENSETEG00000018542 I 0.478
HBP1 Homo sapiens ENSG00000105856 D 0.478
Ogr19131 Ophisaurus gracilis Ogr19131 N 0.478
Hbp1 Mus musculus ENSMUSG00000002996 D 0.478
Ocbimv22007316m.g Octopus bimaculoides Ocbimv22007316m.g N 0.472
AC186524.3_FG005 Zea mays AC186524.3_FG005 N 0.465
e_gw1.88.21.1 Fragilariopsis cylindrus e_gw1.88.21.1 N 0.464
GRMZM2G324727 Zea mays GRMZM2G324727 N 0.459
H101_08199 Trichophyton interdigitale H101_08199 N 0.457
PK25712.1 Cannabis sativa PK25712.1 N 0.456
Traes_6DL_F46673879 Triticum aestivum Traes_6DL_F46673879 N 0.455
CaO19.9298 Candida albicans CaO19.9298 N 0.453
CaO19.1730 Candida albicans CaO19.1730 N 0.453
SOX11 Ornithorhynchus anatinus ENSOANG00000006361 N 0.452
PXEA_0001829801 Protopolystoma xenopodis PXEA_0001829801 N 0.452
DAPPUDRAFT_346928 Daphnia pulex DAPPUDRAFT_346928 N 0.452
ENSCPOG00000024750 Cavia porcellus ENSCPOG00000024750 I 0.452
Sjc_0095610 Schistosoma japonicum Sjc_0095610 N 0.451
Traes_1DL_ED7FDC748 Triticum aestivum Traes_1DL_ED7FDC748 N 0.448
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.447
Minc04648 Meloidogyne incognita Minc04648 N 0.447
Minc03634 Meloidogyne incognita Minc03634 N 0.447
Si007288m.g Setaria italica Si007288m.g I 0.445
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.445
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.445
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.441
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.440
ENSORLG00000018700 Oryzias latipes ENSORLG00000018700 N 0.428
RO3G_14677 Rhizopus oryzae RO3G_14677 N 0.424
PredSwiss_ASS2010_3146.2 Pneumocystis carinii PredSwiss_ASS2010_3146.2 N 0.422
SPOG_05006 Schizosaccharomyces cryophilus SPOG_05006 N 0.422
GRMZM2G150348 Zea mays GRMZM2G150348 N 0.421
ENSTNIG00000019242 Tetraodon nigroviridis ENSTNIG00000019242 N 0.417
Traes_3AL_730255B9F Triticum aestivum Traes_3AL_730255B9F I 0.416
SapurV1A.0248s0170 Salix purpurea SapurV1A.0248s0170 I 0.416