Bra035256 (Brassica rapa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Bra035256 T326718_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.583 0.741
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.583 0.741
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra035256.1-P Sox 137 205
Bra035256.1-P Sox 255 322
Bra035256.1-P Sox 359 427

Links

Other Sox family TFs
Other Brassica rapa TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.586
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.584
HMGB13 Arabidopsis thaliana AT4G11080 D 0.583
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.577
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.567
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.552
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.529
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.514
HMGB6 Arabidopsis thaliana AT4G23800 I 0.513
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.508
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.492
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.492
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.491
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.489
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.487
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.482
Bra013731 Brassica rapa Bra013731 I 0.473
Bo1g037180 Brassica oleracea Bo1g037180 I 0.473
TCM_016416 Theobroma cacao TCM_016416 I 0.468
30190.m010807 Ricinus communis 30190.m010807 I 0.465
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.462
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.461
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.460
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.451
Pm024077 Prunus mume Pm024077 I 0.451
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.450
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.448
mgf015439m Mimulus guttatus mgf015439m I 0.442
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.436
Cla011101 Citrullus lanatus Cla011101 I 0.435
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.434
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.433
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.433
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.430
Si017040m.g Setaria italica Si017040m.g I 0.420
PK10992.1 Cannabis sativa PK10992.1 I 0.418
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.417