TF Information

CGI_10015746 *(Crassostrea gigas)* Sox
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00505 (HMG_box)	IPR000910	CGI_10015746	T327009_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Cic M00195_2.00	Mus musculus	NNTGCTGABN	NVTCAGCANN	PBM Badis et al.(2009) Cic_3454	0.728	0.928
cic M06452_2.00	Drosophila melanogaster	YYCATTSA	TSAATGRR	B1H Zhu et al.(2011) cic_SANGER_5_FBgn0028386	0.680	0.768
gei-3 M00711_2.00	Caenorhabditis elegans	NWNWMWDN	NHWKWNWN	PBM Narasimhan et al.(2015) pTH10038	0.678	0.783
BBX M05763_2.00	Homo sapiens	TGAWCDNYGWTCA	TGAWCRNHGWTCA	SELEX Yin et al.(2017) BBX_eDBD_HT-SELEX	0.468	0.565
BBX M05764_2.00	Homo sapiens	TGAACDNYGTTCA	TGAACRNHGTTCA	SELEX Yin et al.(2017) BBX_eDBD_Methyl-HT-SELEX	0.468	0.565
ROX1 M00070_2.00	Saccharomyces cerevisiae	NRAACAATWNN	NNWATTGTTYN	PBM Badis et al.(2008) ROX1_2099	0.440	0.333
ROX1 M07498_2.00	Saccharomyces cerevisiae	YYHATTGTTYTS	SARAACAATDRR	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0371.1	0.440	0.333
ROX1 M08607_2.00	Saccharomyces cerevisiae	BYATTGTN	NACAATRV	Misc DeBoer et al.(2011) YPR065W_1396	0.440	0.333
ROX1 M11346_2.00	Saccharomyces cerevisiae	Transfac license required	Transfac license required	Transfac Matys et al.(2006) F$ROX1_Q6_01	0.440	0.333
ROX1 M11347_2.00	Saccharomyces cerevisiae	Transfac license required	Transfac license required	Transfac Matys et al.(2006) F$ROX1_Q6	0.440	0.333
bbx M03975_2.00	Drosophila melanogaster	NAACAATDNCATTGTTN	NAACAATGNHATTGTTN	SELEX Nitta et al.(2015) bbx_1	0.440	0.522
Bbx M00196_2.00	Mus musculus	TTCATTGA	TCAATGAA	PBM Badis et al.(2009) Bbx_3753	0.434	0.551
For this family, TFs with SR scores > 0.415* will likely have a similar motif*