CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CH063_09403
(
Colletotrichum higginsianum
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
CH063_09403
T327038_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
mat1-Mc
M11340_2.00
Schizosaccharomyces pombe
NRMNNAACAAAGAVRYMW
AKRYBTCTTTGTTNNKYN
Transfac
Matys et al.(2006)
F$MAT1MC_01
0.527
0.493
mat1-Mc
M11341_2.00
Schizosaccharomyces pombe
YYHATTGTYD
HRACAATDRR
Transfac
Matys et al.(2006)
F$MAT1MC_02
0.527
0.493
Sox102F
M03981_2.00
Drosophila melanogaster
ATTGTTCGGTGKN
NMCACCGAACAAT
SELEX
Nitta et al.(2015)
Sox102F_1
0.439
0.348
Sox102F
M03982_2.00
Drosophila melanogaster
NAACAATDDCATTGTTN
NAACAATGHHATTGTTN
SELEX
Nitta et al.(2015)
Sox102F_2
0.439
0.348
egl-13
M00710_2.00
Caenorhabditis elegans
NNAACAATWN
NWATTGTTNN
PBM
Narasimhan et al.(2015)
pTH9125
0.439
0.333
Sry
M00211_2.00
Mus musculus
ATTRTNNNNN
NNNNNAYAAT
PBM
Badis et al.(2009)
Sry_2833
0.437
0.319
Sry
M09408_2.00
Mus musculus
BWTTGTTWH
DWAACAAWV
Misc
Kulakovskiy et al.(2013)
SRY_MOUSE.H11MO.0.B
0.437
0.319
ste11
M11342_2.00
Schizosaccharomyces pombe
DWNTTTCTTTGTTHNHWW
WWDNDAACAAAGAAANWH
Transfac
Matys et al.(2006)
F$STE11_01
0.432
0.333
ste11
M11343_2.00
Schizosaccharomyces pombe
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$STE11_02
0.432
0.333
Sox15
M03973_2.00
Drosophila melanogaster
WYTGTTCGGTD
HACCGAACARW
SELEX
Nitta et al.(2015)
Sox15_1
0.432
0.348
Sox15
M03974_2.00
Drosophila melanogaster
VACAATDNCATTGTN
NACAATGNHATTGTB
SELEX
Nitta et al.(2015)
Sox15_2
0.432
0.348
Sox15
M06450_2.00
Drosophila melanogaster
RWACAATR
YATTGTWY
B1H
Zhu et al.(2011)
Sox15_SANGER_5_FBgn0005613
0.432
0.348
fmf-1
M02491_2.00
Neurospora crassa
TCTTTGTY
RACAAAGA
PBM
Weirauch et al.(2014)
pTH8941
0.429
0.348
Sox15
M00202_2.00
Mus musculus
WTTVWNNNN
NNNNWBAAW
PBM
Badis et al.(2009)
Sox15_3457
0.426
0.377
SOX15
M03508_2.00
Homo sapiens
AACAATAMCATTGTT
AACAATGKTATTGTT
SELEX
Jolma et al.(2013)
SOX15_1
0.426
0.362
SOX15
M03509_2.00
Homo sapiens
ATCAATAMCATTGAT
ATCAATGKTATTGAT
SELEX
Jolma et al.(2013)
SOX15_2
0.426
0.362
SOX15
M03510_2.00
Homo sapiens
ATGAATAACATTCAT
ATGAATGTTATTCAT
SELEX
Jolma et al.(2013)
SOX15_3
0.426
0.362
SOX15
M05893_2.00
Homo sapiens
YYWTTGTNHN
NDNACAAWRR
SMiLE-seq
Isakova et al.(2017)
SOX15
0.426
0.362
SOX15
M11308_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX15_Q3
0.426
0.362
Sox14
M00829_2.00
Mus musculus
NAACAATD
HATTGTTN
PBM
Weirauch et al.(2013)
pTH2677
0.424
0.391
Sox14
M00206_2.00
Mus musculus
NNNABAAW
WTTVTNNN
PBM
Badis et al.(2009)
Sox14_2677
0.424
0.391
SOX14
M03513_2.00
Homo sapiens
ACAMTAMCATTG
CAATGKTAKTGT
SELEX
Jolma et al.(2013)
SOX14_1
0.424
0.391
SOX14
M03514_2.00
Homo sapiens
NTGAATANCATTCAN
NTGAATGNTATTCAN
SELEX
Jolma et al.(2013)
SOX14_2
0.424
0.391
SOX14
M03515_2.00
Homo sapiens
TCAATWVCATTGA
TCAATGBWATTGA
SELEX
Jolma et al.(2013)
SOX14_3
0.424
0.391
SOX14
M05783_2.00
Homo sapiens
NYATTGWNNN
NNNWCAATRN
SELEX
Yin et al.(2017)
SOX14_eDBD_HT-SELEX
0.424
0.391
SOX14
M05785_2.00
Homo sapiens
NCGAACAATK
MATTGTTCGN
SELEX
Yin et al.(2017)
SOX14_FL_HT-SELEX
0.424
0.391
SOX14
M05784_2.00
Homo sapiens
NYATTGTNNN
NNNACAATRN
SELEX
Yin et al.(2017)
SOX14_eDBD_Methyl-HT-SELEX
0.424
0.391
SOX14
M05786_2.00
Homo sapiens
NATTGTTYGB
VCRAACAATN
SELEX
Yin et al.(2017)
SOX14_FL_Methyl-HT-SELEX
0.424
0.391
Sox1
M00214_2.00
Mus musculus
NNNNNWBAAW
WTTVWNNNNN
PBM
Badis et al.(2009)
Sox1_2631
0.424
0.362
SOX2
M03519_2.00
Homo sapiens
DAACAATGKYAKTGTTN
NAACAMTRMCATTGTTH
SELEX
Jolma et al.(2013)
SOX2_1
0.424
0.362
SOX2
M03520_2.00
Homo sapiens
VTGAATGDYATTCAN
NTGAATRHCATTCAB
SELEX
Jolma et al.(2013)
SOX2_2
0.424
0.362
SOX2
M03521_2.00
Homo sapiens
NATCAATGNYATTGAWD
HWTCAATRNCATTGATN
SELEX
Jolma et al.(2013)
SOX2_3
0.424
0.362
SOX2
M03522_2.00
Homo sapiens
NAACAATANCATTGTTH
DAACAATGNTATTGTTN
SELEX
Jolma et al.(2013)
SOX2_4
0.424
0.362
SOX2
M03523_2.00
Homo sapiens
HATCAATANCATTGATH
DATCAATGNTATTGATD
SELEX
Jolma et al.(2013)
SOX2_5
0.424
0.362
SOX2
M03524_2.00
Homo sapiens
DTGAATWNCATTCAH
DTGAATGNWATTCAH
SELEX
Jolma et al.(2013)
SOX2_6
0.424
0.362
Sox1
M03542_2.00
Mus musculus
VACAATWNCATTGTT
AACAATGNWATTGTB
SELEX
Jolma et al.(2013)
Sox1_1
0.424
0.362
Sox1
M03543_2.00
Mus musculus
NTGAATWNCATTCAN
NTGAATGNWATTCAN
SELEX
Jolma et al.(2013)
Sox1_2
0.424
0.362
Sox1
M03544_2.00
Mus musculus
TCAATWNCATTGA
TCAATGNWATTGA
SELEX
Jolma et al.(2013)
Sox1_3
0.424
0.362
Sox1
M03545_2.00
Mus musculus
TGAATDDNHATTCA
TGAATDNHHATTCA
SELEX
Jolma et al.(2013)
Sox1_4
0.424
0.362
SoxN
M03976_2.00
Drosophila melanogaster
VYGHACARTNN
NNAYTGTDCRB
SELEX
Nitta et al.(2015)
SoxN_1
0.424
0.362
SoxN
M03977_2.00
Drosophila melanogaster
NCAATNVCATTGN
NCAATGBNATTGN
SELEX
Nitta et al.(2015)
SoxN_2
0.424
0.362
SOX2
M05897_2.00
Homo sapiens
NACAAWRRNN
NNYYWTTGTN
SMiLE-seq
Isakova et al.(2017)
SOX2
0.424
0.362
Sox2
M08170_2.00
Mus musculus
CCWTTGTB
VACAAWGG
ChIP-seq
Mathelier et al.(2014)
MA0143.3
0.424
0.362
Sox2
M08041_2.00
Mus musculus
WHWRMADNACAAWRR
YYWTTGTNHTKYWDW
ChIP-seq
Chen et al.(2011)
SRP000217_Sox2
0.424
0.362
Sox2
M08042_2.00
Mus musculus
TTWRCATNWSAAWRV
BYWTTSWNATGYWAA
ChIP-seq
Chen et al.(2011)
SRP000712_Sox2
0.424
0.362
SOX2
M09397_2.00
Homo sapiens
BBYYWTTGTBYBB
VVRVACAAWRRVV
Misc
Kulakovskiy et al.(2013)
SOX2_HUMAN.H11MO.0.A
0.424
0.362
Sox2
M09409_2.00
Mus musculus
THWRCATNACAAWRRV
BYYWTTGTNATGYWDA
Misc
Kulakovskiy et al.(2013)
SOX2_MOUSE.H11MO.0.A
0.424
0.362
SOX2
M11327_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX2_Q3_01
0.424
0.362
SOX2
M11328_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX2_Q3
0.424
0.362
SOX2
M11329_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX2_Q4
0.424
0.362
SOX2
M11330_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX2_Q6
0.424
0.362
Sox18
M00204_2.00
Mus musculus
NNNWBAAT
ATTVWNNN
PBM
Badis et al.(2009)
Sox18_3506
0.423
0.319
SOX18
M03529_2.00
Homo sapiens
AACAATDNCATTGTT
AACAATGNHATTGTT
SELEX
Jolma et al.(2013)
SOX18_1
0.423
0.319
SOX18
M03530_2.00
Homo sapiens
ATCAATWDCATTGAT
ATCAATGHWATTGAT
SELEX
Jolma et al.(2013)
SOX18_2
0.423
0.319
SOX18
M03531_2.00
Homo sapiens
ATGAATWYCATTCAT
ATGAATGRWATTCAT
SELEX
Jolma et al.(2013)
SOX18_3
0.423
0.319
SOX18
M05791_2.00
Homo sapiens
VACRAYGV
BCRTYGTB
SELEX
Yin et al.(2017)
SOX18_eDBD_HT-SELEX
0.423
0.319
SOX18
M11334_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX18_Q5_01
0.423
0.319
SOX18
M11335_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX18_Q5
0.423
0.319
SOX18
M05792_2.00
Homo sapiens
BYATTGTN
NACAATRV
SELEX
Yin et al.(2017)
SOX18_eDBD_Methyl-HT-SELEX
0.423
0.319
Sox17
M00199_2.00
Mus musculus
NNNNWSAAT
ATTSWNNNN
PBM
Badis et al.(2009)
Sox17_2837
0.423
0.304
Sox17
M03533_2.00
Mus musculus
AACAATWDCATTGTT
AACAATGHWATTGTT
SELEX
Jolma et al.(2013)
Sox17_1
0.423
0.304
Sox17
M03534_2.00
Mus musculus
ATGAATWNCATTCAT
ATGAATGNWATTCAT
SELEX
Jolma et al.(2013)
Sox17_2
0.423
0.304
SOX17
M05896_2.00
Homo sapiens
DRACAATRVN
NBYATTGTYH
SMiLE-seq
Isakova et al.(2017)
SOX17
0.423
0.304
Sox17
M02718_2.00
Mus musculus
SACAATRNN
NNYATTGTS
SELEX
Mathelier et al.(2014)
MA0078.1
0.423
0.304
Sox17
M08040_2.00
Mus musculus
RVACAAWRRVN
NBYYWTTGTBY
ChIP-seq
Chen et al.(2011)
GSE19026_Sox17_XENcells
0.423
0.304
SOX17
M09396_2.00
Homo sapiens
BCCATTKTNBN
NVNAMAATGGV
Misc
Kulakovskiy et al.(2013)
SOX17_HUMAN.H11MO.0.C
0.423
0.304
SOX17
M11323_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX17_01
0.423
0.304
SOX17
M11324_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX17_Q2
0.423
0.304
SRY
M03525_2.00
Homo sapiens
AACAATANCATTGTT
AACAATGNTATTGTT
SELEX
Jolma et al.(2013)
SRY_1
0.421
0.304
SRY
M03526_2.00
Homo sapiens
AACAATHHNCATTGTT
AACAATGNDDATTGTT
SELEX
Jolma et al.(2013)
SRY_2
0.421
0.304
SRY
M03527_2.00
Homo sapiens
TCAATAMCATTGA
TCAATGKTATTGA
SELEX
Jolma et al.(2013)
SRY_3
0.421
0.304
SRY
M03528_2.00
Homo sapiens
TGAATANCATTCA
TGAATGNTATTCA
SELEX
Jolma et al.(2013)
SRY_4
0.421
0.304
SRY
M05898_2.00
Homo sapiens
NACAATNV
BNATTGTN
SMiLE-seq
Isakova et al.(2017)
SRY
0.421
0.304
SRY
M02717_2.00
Homo sapiens
NDWAACAAW
WTTGTWWHN
SELEX
Mathelier et al.(2014)
MA0084.1
0.421
0.304
SRY
M09398_2.00
Homo sapiens
BWTTGTTWH
DWAACAAWV
Misc
Kulakovskiy et al.(2013)
SRY_HUMAN.H11MO.0.B
0.421
0.304
SRY
M11331_2.00
Homo sapiens
AAWSWMM
KKWSWTT
Transfac
Matys et al.(2006)
V$SRY_01
0.421
0.304
SRY
M11332_2.00
Homo sapiens
HBHWTTGTTWDN
NHWAACAAWDVD
Transfac
Matys et al.(2006)
V$SRY_02
0.421
0.304
SRY
M11333_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRY_Q6
0.421
0.304
D
M03969_2.00
Drosophila melanogaster
AMVGAACAAT
ATTGTTCBKT
SELEX
Nitta et al.(2015)
D_1
0.417
0.377
D
M03970_2.00
Drosophila melanogaster
NAACAATDNCATTGTTN
NAACAATGNHATTGTTN
SELEX
Nitta et al.(2015)
D_2
0.417
0.377
Sox21b
M03983_2.00
Drosophila melanogaster
NAACAMTWNCAKTGTTB
VAACAMTGNWAKTGTTN
SELEX
Nitta et al.(2015)
Sox21b_1
0.417
0.377
D
M06559_2.00
Drosophila melanogaster
BCYWTTGTTNT
ANAACAAWRGV
B1H
Mathelier et al.(2014)
MA0445.1
0.417
0.377
D
M06448_2.00
Drosophila melanogaster
BCYATTGTYNW
WNRACAATRGV
B1H
Zhu et al.(2011)
D_NAR_FBgn0000411
0.417
0.377
D
M09694_2.00
Drosophila melanogaster
RACAAWRGVH
DBCYWTTGTY
Misc
Kulakovskiy et al.(2009)
D
0.417
0.377
Sox21a
M03978_2.00
Drosophila melanogaster
NMACAMTAVCATTGTKN
NMACAATGBTAKTGTKN
SELEX
Nitta et al.(2015)
Sox21a_1
0.417
0.362
Sox21a
M03979_2.00
Drosophila melanogaster
NNACAMTANCATTGTYH
DRACAATGNTAKTGTNN
SELEX
Nitta et al.(2015)
Sox21a_2
0.417
0.362
Sox21
M00208_2.00
Mus musculus
WTTVWNNNN
NNNNWBAAW
PBM
Badis et al.(2009)
Sox21_3417
0.417
0.348
SOX21
M03497_2.00
Homo sapiens
AACAATKKYAKTGTT
AACAMTRMMATTGTT
SELEX
Jolma et al.(2013)
SOX21_1
0.417
0.348
SOX21
M03498_2.00
Homo sapiens
AACAATRKDYAKTGTT
AACAMTRHMYATTGTT
SELEX
Jolma et al.(2013)
SOX21_2
0.417
0.348
SOX21
M03499_2.00
Homo sapiens
TCAATGDYAKTGA
TCAMTRHCATTGA
SELEX
Jolma et al.(2013)
SOX21_3
0.417
0.348
SOX21
M03500_2.00
Homo sapiens
TGAATGKYAKTCA
TGAMTRMCATTCA
SELEX
Jolma et al.(2013)
SOX21_4
0.417
0.348
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CCF38267
Sox
140
208
ITRPPNAFILYRSDFQAQLKLMNPHIQNHDISKRLGAAWNSESHEVRERYRALAKAYKERHNKMHPDYR
Links
Other
Sox
family TFs
Other
Colletotrichum higginsianum
TFs
1246 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy