CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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EFV51436
(
Trichinella spiralis
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
EFV51436
T327418_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EFV51436
Sox
157
201
EKRMRAAFAAFQERNLPLLKKENPTLRQSQLMQMLKKEWQKSADN
Links
Other
Sox
family TFs
Other
Trichinella spiralis
TFs
129 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AT5G04760
Arabidopsis thaliana
AT5G04760
D
0.000
Ciclev10016071m.g
Citrus clementina
Ciclev10016071m.g
I
0.000
Carubv10003623m.g
Capsella rubella
Carubv10003623m.g
I
0.000
Cagra.5249s0014
Capsella grandiflora
Cagra.5249s0014
I
0.000
Bostr.13129s0486
Boechera stricta
Bostr.13129s0486
I
0.000
Aquca_035_00057
Aquilegia coerulea
Aquca_035_00057
I
0.000
mgf009460m
Mimulus guttatus
mgf009460m
I
0.000
Cucsa.280970
Cucumis sativus
Cucsa.280970
I
0.000
Cucsa.013870
Cucumis sativus
Cucsa.013870
I
0.000
cassava18614.valid.m1
Manihot esculenta
cassava18614.valid.m1
I
0.000
30131.m007263
Ricinus communis
30131.m007263
I
0.000
30055.m001589
Ricinus communis
30055.m001589
I
0.000
Pm017050
Prunus mume
Pm017050
I
0.000
Pm006046
Prunus mume
Pm006046
I
0.000
Cla020348
Citrullus lanatus
Cla020348
I
0.000
Cla009230
Citrullus lanatus
Cla009230
I
0.000
Ciclev10032259m.g
Citrus clementina
Ciclev10032259m.g
I
0.000
Eucgr.G02591
Eucalyptus grandis
Eucgr.G02591
I
0.000
Thhalv10014613m.g
Eutrema salsugineum
Thhalv10014613m.g
I
0.000
SapurV1A.1671s0040
Salix purpurea
SapurV1A.1671s0040
I
0.000
SapurV1A.0450s0110
Salix purpurea
SapurV1A.0450s0110
I
0.000
SapurV1A.0234s0050
Salix purpurea
SapurV1A.0234s0050
I
0.000
SapurV1A.0036s0350
Salix purpurea
SapurV1A.0036s0350
I
0.000
orange1.1g022439m.g
Citrus sinensis
orange1.1g022439m.g
I
0.000
PK13672.1
Cannabis sativa
PK13672.1
I
0.000
MDP0000289018
Malus domestica
MDP0000289018
I
0.000
Gorai.013G067600
Gossypium raimondii
Gorai.013G067600
I
0.000
Gorai.012G135600
Gossypium raimondii
Gorai.012G135600
I
0.000
Gorai.008G147400
Gossypium raimondii
Gorai.008G147400
I
0.000
Gorai.006G118200
Gossypium raimondii
Gorai.006G118200
I
0.000
Gorai.005G212900
Gossypium raimondii
Gorai.005G212900
I
0.000
gene23544-v1.0-hybrid
Fragaria vesca
gene23544-v1.0-hybrid
I
0.000
evm.TU.supercontig_138.5
Carica papaya
evm.TU.supercontig_138.5
I
0.000
Ca_19000
Cicer arietinum
Ca_19000
I
0.000
Ca_05454
Cicer arietinum
Ca_05454
I
0.000
Bo2g006670
Brassica oleracea
Bo2g006670
I
0.000
PGSC0003DMG400025303
Solanum tuberosum
PGSC0003DMG400025303
I
0.000
Bra009432
Brassica rapa
Bra009432
I
0.000
GSMUA_Achr9G23760_001
Musa acuminata
GSMUA_Achr9G23760_001
I
0.000
GSMUA_Achr9G20620_001
Musa acuminata
GSMUA_Achr9G20620_001
I
0.000
GSMUA_Achr1G17730_001
Musa acuminata
GSMUA_Achr1G17730_001
I
0.000
GLYMA20G24600
Glycine max
GLYMA20G24600
I
0.000
GLYMA20G01450
Glycine max
GLYMA20G01450
I
0.000
GLYMA18G18140
Glycine max
GLYMA18G18140
I
0.000
GLYMA10G42450
Glycine max
GLYMA10G42450
I
0.000
GLYMA08G40020
Glycine max
GLYMA08G40020
I
0.000
GLYMA07G28310
Glycine max
GLYMA07G28310
I
0.000
Bra028780
Brassica rapa
Bra028780
I
0.000
Bra005818
Brassica rapa
Bra005818
I
0.000
Bo9g178980
Brassica oleracea
Bo9g178980
I
0.000
Bo3g002960
Brassica oleracea
Bo3g002960
I
0.000
PRUPE_ppa009396mg
Prunus persica
PRUPE_ppa009396mg
I
0.000
PRUPE_ppa010926mg
Prunus persica
PRUPE_ppa010926mg
I
0.000
scaffold_600421.1
Arabidopsis lyrata
scaffold_600421.1
I
0.000
VIT_10s0071g00660
Vitis vinifera
VIT_10s0071g00660
I
0.000
VIT_06s0080g00790
Vitis vinifera
VIT_06s0080g00790
I
0.000
TCM_007672
Theobroma cacao
TCM_007672
I
0.000
TCM_041160
Theobroma cacao
TCM_041160
I
0.000
Aquca_072_00078
Aquilegia coerulea
Aquca_072_00078
N
0.000
TCM_041362
Theobroma cacao
TCM_041362
N
0.000
orange1.1g026855m.g
Citrus sinensis
orange1.1g026855m.g
N
0.000
Pavir.Ga00233
Panicum virgatum
Pavir.Ga00233
N
0.000
Pavir.Gb00055
Panicum virgatum
Pavir.Gb00055
N
0.000
Ciclev10029205m.g
Citrus clementina
Ciclev10029205m.g
N
0.000
Cla014242
Citrullus lanatus
Cla014242
N
0.000
Cla013899
Citrullus lanatus
Cla013899
N
0.000
Solyc11g006720.1
Solanum lycopersicum
Solyc11g006720.1
N
0.000
Solyc05g055240.2
Solanum lycopersicum
Solyc05g055240.2
N
0.000
Si022762m.g
Setaria italica
Si022762m.g
N
0.000
gw1.13.182.1
Physcomitrella patens
gw1.13.182.1
N
0.000
PGSC0003DMG400023495
Solanum tuberosum
PGSC0003DMG400023495
N
0.000
PGSC0003DMG400007603
Solanum tuberosum
PGSC0003DMG400007603
N
0.000
e_gw1.256.18.1
Physcomitrella patens
e_gw1.256.18.1
N
0.000
Cucsa.364590
Cucumis sativus
Cucsa.364590
N
0.000
GSMUA_Achr9G21870_001
Musa acuminata
GSMUA_Achr9G21870_001
N
0.000
SELMODRAFT_47760
Selaginella moellendorffii
SELMODRAFT_47760
N
0.000
Cucsa.103200
Cucumis sativus
Cucsa.103200
N
0.000
GSMUA_Achr11G09110_001
Musa acuminata
GSMUA_Achr11G09110_001
N
0.000
Gorai.006G113100
Gossypium raimondii
Gorai.006G113100
N
0.000
SELMODRAFT_47768
Selaginella moellendorffii
SELMODRAFT_47768
N
0.000
MDP0000610242
Malus domestica
MDP0000610242
N
0.000