CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSAMXG00000017231
(
Astyanax mexicanus
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
ENSAMXG00000017231
T327571_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Sox11
M00210_2.00
Mus musculus
WTTGTBNNN
NNNVACAAW
PBM
Badis et al.(2009)
Sox11_2266
0.202
1.000
Sox11
M03541_2.00
Mus musculus
AACAATTKCAGTGTT
AACACTGMAATTGTT
SELEX
Jolma et al.(2013)
Sox11_1
0.202
1.000
SOX11
M11326_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX11_Q6
0.202
1.000
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSAMXP00000017736
Sox
1
33
KRWKMLKDSEKIPFIREAERLRLKHMADYPDYK
Links
Other
Sox
family TFs
Other
Astyanax mexicanus
TFs
258 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy