ENSAMXG00000017656 (Astyanax mexicanus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSAMXG00000017656 T327574_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BBX
M05763_2.00
Homo sapiens
TGAWCDNYGWTCA

TGAWCRNHGWTCA
SELEX
Yin et al.(2017)
BBX_eDBD_HT-SELEX
0.735 0.971
BBX
M05764_2.00
Homo sapiens
TGAACDNYGTTCA

TGAACRNHGTTCA
SELEX
Yin et al.(2017)
BBX_eDBD_Methyl-HT-SELEX
0.735 0.971
Bbx
M00196_2.00
Mus musculus
TTCATTGA

TCAATGAA
PBM
Badis et al.(2009)
Bbx_3753
0.701 0.957
bbx
M03975_2.00
Drosophila melanogaster
NAACAATDNCATTGTTN

NAACAATGNHATTGTTN
SELEX
Nitta et al.(2015)
bbx_1
0.512 0.594
Cic
M00195_2.00
Mus musculus
NNTGCTGABN

NVTCAGCANN
PBM
Badis et al.(2009)
Cic_3454
0.468 0.580
cic
M06452_2.00
Drosophila melanogaster
YYCATTSA

TSAATGRR
B1H
Zhu et al.(2011)
cic_SANGER_5_FBgn0028386
0.430 0.478
gei-3
M00711_2.00
Caenorhabditis elegans
NWNWMWDN

NHWKWNWN
PBM
Narasimhan et al.(2015)
pTH10038
0.429 0.493
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSAMXP00000018233 Sox 86 154

Links

Other Sox family TFs
Other Astyanax mexicanus TFs

284 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A1O1_05906 Capronia coronata A1O1_05906 N 0.000
A1O3_01091 Capronia epimyces A1O3_01091 N 0.000
A1O7_00778 Cladophialophora yegresii A1O7_00778 N 0.000
A1O9_05997 Exophiala aquamarina A1O9_05997 N 0.000
AB03580.1 Alternaria brassicicola AB03580.1 N 0.000
ACLA_022120 Aspergillus clavatus CADACLAG00002202 N 0.000
ANIA_00671 Aspergillus nidulans CADANIAG00002003 N 0.000
CCM_08871 Cordyceps militaris CCM_08871 N 0.000
Cob_01259 Colletotrichum orbiculare Cob_01259 N 0.000
COCC4DRAFT_198480 Bipolaris maydis COCC4DRAFT_198480 N 0.000
COCCADRAFT_93203 Bipolaris zeicola COCCADRAFT_93203 N 0.000
COCMIDRAFT_107360 Bipolaris oryzae COCMIDRAFT_107360 N 0.000
COCSADRAFT_100739 Bipolaris sorokiniana COCSADRAFT_100739 N 0.000
COCVIDRAFT_115187 Bipolaris victoriae COCVIDRAFT_115187 N 0.000
CPUR_06660 Claviceps purpurea CPUR_06660 N 0.000
CSUB01_03903 Colletotrichum sublineola CSUB01_03903 N 0.000
fgenesh1_pg.sca_8_chr1_1_0000361 Nectria haematococca fgenesh1_pg.sca_8_chr1_1_0000361 N 0.000
FGRRES_01428 Fusarium graminearum FGRRES_01428 N 0.000
FPSE_08525 Fusarium pseudograminearum FPSE_08525 N 0.000
GLRG_08121 Colletotrichum graminicola GLRG_08121 N 0.000
MAJ_00529 Metarhizium majus MAJ_00529 N 0.000
MAM_03998 Metarhizium album MAM_03998 N 0.000
MANI_117353 Metarhizium anisopliae MANI_117353 N 0.000
MBR_02139 Metarhizium brunneum MBR_02139 N 0.000
MGU_04466 Metarhizium guizhouense MGU_04466 N 0.000
PTRG_04471 Pyrenophora triticirepentis PTRG_04471 N 0.000
PTT_12321 Pyrenophora teres PTT_12321 N 0.000
PV05_11590 Exophiala xenobiotica PV05_11590 N 0.000
PV06_03512 Exophiala oligosperma PV06_03512 N 0.000
PV08_05909 Exophiala spinifera PV08_05909 N 0.000
PV10_08806 Exophiala mesophila PV10_08806 N 0.000
SETTUDRAFT_86463 Setosphaeria turcica SETTUDRAFT_86463 N 0.000
VDAG_03951 Verticillium dahliae VDAG_03951 N 0.000
X797_000127 Metarhizium robertsii X797_000127 N 0.000
Z518_04390 Rhinocladiella mackenziei Z518_04390 N 0.000