ENSCING00000000505 (Ciona intestinalis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSCING00000000505 T327682_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.423 0.300
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.423 0.300
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.423 0.300
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000000932 Sox 554 603

Links

Other Sox family TFs
Other Ciona intestinalis TFs

231 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACOC_0001190001 Angiostrongylus costaricensis ACOC_0001190001 N 0.552
ACAC_0000798501 Angiostrongylus cantonensis ACAC_0000798501 N 0.552
Sakowv30021656m.g Saccoglossus kowalevskii Sakowv30021656m.g N 0.530
ANCDUO_24269 Ancylostoma duodenale ANCDUO_24269 N 0.517
ASIS014204 Anopheles sinensis ASIS014204 N 0.514
SVUK_0001721701 Strongylus vulgaris SVUK_0001721701 N 0.512
fgenesh2_pg.scaffold_4000274 Monosiga brevicollis fgenesh2_pg.scaffold_4000274 N 0.503
SERLA73DRAFT_131740 Serpula lacrymans SERLA73DRAFT_131740 I 0.494
GPUH_0000029001 Gongylonema pulchrum GPUH_0000029001 N 0.490
DME_0000590001 Dracunculus medinensis DME_0000590001 N 0.487
scaffold593-EXSNAP2012.5 Pristionchus exspectatus scaffold593-EXSNAP2012.5 N 0.470
PPA12247 Pristionchus pacificus PPA12247 N 0.470
estExt_fgenesh3_kg.C_170031 Heterobasidion annosum estExt_fgenesh3_kg.C_170031 I 0.459
HETIRDRAFT_439796 Heterobasidion irregulare HETIRDRAFT_439796 I 0.459
WUBG_06999 Wuchereria bancrofti WUBG_06999 N 0.449
LOAG_08062 Loa loa LOAG_08062 N 0.449
TCLT_0000071201 Thelazia callipaeda TCLT_0000071201 N 0.449
GPUH_0002275001 Gongylonema pulchrum GPUH_0002275001 N 0.449
SMUV_0000634201 Syphacia muris SMUV_0000634201 N 0.449
AAEL002381 Aedes aegypti AAEL002381 N 0.448
OESDEN_18796 Oesophagostomum dentatum OESDEN_18796 N 0.446
PNEG_03347 Pneumocystis murina PNEG_03347 I 0.446
scaffold_600397.1 Arabidopsis lyrata scaffold_600397.1 I 0.442
ANCCAN_19939 Ancylostoma caninum ANCCAN_19939 N 0.441
ADIR004390 Anopheles dirus ADIR004390 N 0.438
BTMF_0000420901 Brugia timori BTMF_0000420901 N 0.430
SNAPOd2T00002710001 Oikopleura dioica SNAPOd2T00002710001 I 0.430
ISCW008318 Ixodes scapularis ISCW008318 N 0.429
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.429
Lus10024603.g Linum usitatissimum Lus10024603.g I 0.427
Lus10032240.g Linum usitatissimum Lus10032240.g I 0.427
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.426
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.426
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.426
Ocbimv22010533m.g Octopus bimaculoides Ocbimv22010533m.g N 0.425
Traes_5AL_EB97D69D7 Triticum aestivum Traes_5AL_EB97D69D7 I 0.423
TCM_041175 Theobroma cacao TCM_041175 I 0.423
Traes_5AS_31C2540C0 Triticum aestivum Traes_5AS_31C2540C0 I 0.423
Cucsa.295080 Cucumis sativus Cucsa.295080 I 0.423
cassava39022.m1 Manihot esculenta cassava39022.m1 I 0.423
cassava40986.m1 Manihot esculenta cassava40986.m1 I 0.423
Cucsa.086660 Cucumis sativus Cucsa.086660 I 0.423
TCM_038105 Theobroma cacao TCM_038105 I 0.423
mgf015972m Mimulus guttatus mgf015972m I 0.423
Bostr.14547s0027 Boechera stricta Bostr.14547s0027 I 0.423
Bostr.22545s0001 Boechera stricta Bostr.22545s0001 I 0.423
Bostr.25219s0098 Boechera stricta Bostr.25219s0098 I 0.423
Aquca_020_00105 Aquilegia coerulea Aquca_020_00105 I 0.423
Aquca_009_00652 Aquilegia coerulea Aquca_009_00652 I 0.423
cassava33847.m1 Manihot esculenta cassava33847.m1 I 0.423
Solyc11g071810.1 Solanum lycopersicum Solyc11g071810.1 I 0.423
mgf010765m Mimulus guttatus mgf010765m I 0.423
cassava13510.valid.m1 Manihot esculenta cassava13510.valid.m1 I 0.423
Traes_5DS_268147383 Triticum aestivum Traes_5DS_268147383 I 0.423
Ca_07101 Cicer arietinum Ca_07101 I 0.423
Cla008752 Citrullus lanatus Cla008752 I 0.423
Ca_06681 Cicer arietinum Ca_06681 I 0.423
YAB5 Vitis vinifera VIT_11s0016g05590 I 0.423
Bostr.25993s0255 Boechera stricta Bostr.25993s0255 I 0.423
TRIUR3_27402 Triticum urartu TRIUR3_27402 I 0.423
VIT_08s0032g01110 Vitis vinifera VIT_08s0032g01110 I 0.423
Traes_5DL_0E369E1FC Triticum aestivum Traes_5DL_0E369E1FC I 0.423
Traes_5BS_A782F7510 Triticum aestivum Traes_5BS_A782F7510 I 0.423
29854.m001136 Ricinus communis 29854.m001136 I 0.423
29927.m000626 Ricinus communis 29927.m000626 I 0.423
cassava13509.valid.m1 Manihot esculenta cassava13509.valid.m1 I 0.423
Traes_5BL_4DEC298F9 Triticum aestivum Traes_5BL_4DEC298F9 I 0.423
Pm027559 Prunus mume Pm027559 I 0.423
Cla012424 Citrullus lanatus Cla012424 I 0.423
Pm001547 Prunus mume Pm001547 I 0.423
TRIUR3_18590 Triticum urartu TRIUR3_18590 I 0.423
Eucgr.D02474 Eucalyptus grandis Eucgr.D02474 I 0.423
orange1.1g029862m.g Citrus sinensis orange1.1g029862m.g I 0.423
Pavir.Ba03779 Panicum virgatum Pavir.Ba03779 I 0.423
Pavir.Ca02862 Panicum virgatum Pavir.Ca02862 I 0.423
Pavir.Cb00070 Panicum virgatum Pavir.Cb00070 I 0.423
orange1.1g028980m.g Citrus sinensis orange1.1g028980m.g I 0.423
MDP0000500810 Malus domestica MDP0000500810 I 0.423
MDP0000252640 Malus domestica MDP0000252640 I 0.423
MDP0000255415 Malus domestica MDP0000255415 I 0.423
MDP0000331808 Malus domestica MDP0000331808 I 0.423
MDP0000366291 Malus domestica MDP0000366291 I 0.423
Pavir.Ia01130 Panicum virgatum Pavir.Ia01130 I 0.423
Pavir.Ib04136 Panicum virgatum Pavir.Ib04136 I 0.423
Thhalv10017320m.g Eutrema salsugineum Thhalv10017320m.g I 0.423
Thhalv10028925m.g Eutrema salsugineum Thhalv10028925m.g I 0.423
PK06964.1 Cannabis sativa PK06964.1 I 0.423
PK09461.1 Cannabis sativa PK09461.1 I 0.423
Thhalv10008858m.g Eutrema salsugineum Thhalv10008858m.g I 0.423
Thhalv10001617m.g Eutrema salsugineum Thhalv10001617m.g I 0.423
SapurV1A.0034s0500 Salix purpurea SapurV1A.0034s0500 I 0.423
SapurV1A.0258s0090 Salix purpurea SapurV1A.0258s0090 I 0.423
SapurV1A.1100s0080 Salix purpurea SapurV1A.1100s0080 I 0.423
Gorai.010G062900 Gossypium raimondii Gorai.010G062900 I 0.423
Gorai.009G016700 Gossypium raimondii Gorai.009G016700 I 0.423
Carubv10024011m.g Capsella rubella Carubv10024011m.g I 0.423
Carubv10024208m.g Capsella rubella Carubv10024208m.g I 0.423
Ciclev10009560m.g Citrus clementina Ciclev10009560m.g I 0.423
Ciclev10029354m.g Citrus clementina Ciclev10029354m.g I 0.423
Carubv10010384m.g Capsella rubella Carubv10010384m.g I 0.423
Carubv10001833m.g Capsella rubella Carubv10001833m.g I 0.423
Cagra.11302s0003 Capsella grandiflora Cagra.11302s0003 I 0.423
Cagra.1261s0010 Capsella grandiflora Cagra.1261s0010 I 0.423
Cagra.4395s0036 Capsella grandiflora Cagra.4395s0036 I 0.423
Eucgr.C01515 Eucalyptus grandis Eucgr.C01515 I 0.423
Solyc08g079100.2 Solanum lycopersicum Solyc08g079100.2 I 0.423
gene31056-v1.0-hybrid Fragaria vesca gene31056-v1.0-hybrid I 0.423
Gorai.001G042700 Gossypium raimondii Gorai.001G042700 I 0.423
Gorai.001G127000 Gossypium raimondii Gorai.001G127000 I 0.423
Gorai.006G117800 Gossypium raimondii Gorai.006G117800 I 0.423
gene03938-v1.0-hybrid Fragaria vesca gene03938-v1.0-hybrid I 0.423
evm.TU.supercontig_46.14 Carica papaya evm.TU.supercontig_46.14 I 0.423
Eucgr.J00587 Eucalyptus grandis Eucgr.J00587 I 0.423
evm.TU.supercontig_103.34 Carica papaya evm.TU.supercontig_103.34 I 0.423
evm.TU.supercontig_104.5 Carica papaya evm.TU.supercontig_104.5 I 0.423
Cagra.0239s0072 Capsella grandiflora Cagra.0239s0072 I 0.423
Solyc06g073920.2 Solanum lycopersicum Solyc06g073920.2 I 0.423
GLYMA13G22620 Glycine max GLYMA13G22620 I 0.423
GLYMA12G31670 Glycine max GLYMA12G31670 I 0.423
GLYMA13G38750 Glycine max GLYMA13G38750 I 0.423
GLYMA17G12200 Glycine max GLYMA17G12200 I 0.423
GRMZM2G074124 Zea mays GRMZM2G074124 I 0.423
GLYMA12G10210 Glycine max GLYMA12G10210 I 0.423
GLYMA06G46560 Glycine max GLYMA06G46560 I 0.423
F775_28710 Aegilops tauschii F775_28710 I 0.423
YAB2 Arabidopsis lyrata fgenesh2_kg.1__861__AT1G08465.1 I 0.423
YAB5 Arabidopsis lyrata fgenesh2_kg.4__584__AT2G26580.2 I 0.423
YAB3 Arabidopsis lyrata fgenesh2_kg.6__3684__AT4G00180.1 I 0.423
GRMZM2G085873 Zea mays GRMZM2G085873 I 0.423
GRMZM2G106204 Zea mays GRMZM2G106204 I 0.423
Solyc07g008180.2 Solanum lycopersicum Solyc07g008180.2 I 0.423
GSMUA_Achr7G01330_001 Musa acuminata GSMUA_Achr7G01330_001 I 0.423
GSMUA_Achr8G04750_001 Musa acuminata GSMUA_Achr8G04750_001 I 0.423
GSMUA_Achr8G26600_001 Musa acuminata GSMUA_Achr8G26600_001 I 0.423
GSMUA_AchrUn_randomG19410_001 Musa acuminata GSMUA_AchrUn_randomG19410_001 I 0.423
GSMUA_Achr6G31080_001 Musa acuminata GSMUA_Achr6G31080_001 I 0.423
GSMUA_Achr4G31310_001 Musa acuminata GSMUA_Achr4G31310_001 I 0.423
GRMZM2G141955 Zea mays GRMZM2G141955 I 0.423
GSMUA_Achr2G12850_001 Musa acuminata GSMUA_Achr2G12850_001 I 0.423
GSMUA_Achr3G15060_001 Musa acuminata GSMUA_Achr3G15060_001 I 0.423
GSMUA_Achr4G22750_001 Musa acuminata GSMUA_Achr4G22750_001 I 0.423
BRADI4G01300 Brachypodium distachyon BRADI4G01300 I 0.423
BRADI1G57070 Brachypodium distachyon BRADI1G57070 I 0.423
Bo3g037630 Brassica oleracea Bo3g037630 I 0.423
BGIOSGA037817 Oryza indica BGIOSGA037817 I 0.423
Bo3g041840 Brassica oleracea Bo3g041840 I 0.423
Bo4g195410 Brassica oleracea Bo4g195410 I 0.423
Bo5g009010 Brassica oleracea Bo5g009010 I 0.423
BGIOSGA013223 Oryza indica BGIOSGA013223 I 0.423
YAB3 Arabidopsis thaliana AT4G00180 I 0.423
AMTR_s00078p00029420 Amborella trichopoda AMTR_s00078p00029420 I 0.423
YAB2 Arabidopsis thaliana AT1G08465 I 0.423
YAB5 Arabidopsis thaliana AT2G26580 D 0.423
YAB1 Arabidopsis thaliana AT2G45190 D 0.423
Bo6g073320 Brassica oleracea Bo6g073320 I 0.423
Bo8g055830 Brassica oleracea Bo8g055830 I 0.423
Bra031629 Brassica rapa Bra031629 I 0.423
Bra030728 Brassica rapa Bra030728 I 0.423
Bra037320 Brassica rapa Bra037320 I 0.423
Bra040322 Brassica rapa Bra040322 I 0.423
BRADI1G13570 Brachypodium distachyon BRADI1G13570 I 0.423
Bra018624 Brassica rapa Bra018624 I 0.423
Bra003309 Brassica rapa Bra003309 I 0.423
Bo8g112450 Brassica oleracea Bo8g112450 I 0.423
Bo9g001130 Brassica oleracea Bo9g001130 I 0.423
Bra000378 Brassica rapa Bra000378 I 0.423
Bra000538 Brassica rapa Bra000538 I 0.423
LPERR03G22960 Leersia perrieri LPERR03G22960 I 0.423
GSMUA_Achr7G07830_001 Musa acuminata GSMUA_Achr7G07830_001 I 0.423
PGSC0003DMG400002988 Solanum tuberosum PGSC0003DMG400002988 I 0.423
YAB6 Oryza sativa OS12G0621100 I 0.423
PGSC0003DMG400004741 Solanum tuberosum PGSC0003DMG400004741 I 0.423
PGSC0003DMG400005936 Solanum tuberosum PGSC0003DMG400005936 I 0.423
PGSC0003DMG400030904 Solanum tuberosum PGSC0003DMG400030904 I 0.423
YAB1 Oryza sativa OS07G0160100 I 0.423
YAB2 Oryza sativa OS03G0650000 I 0.423
OPUNC12G17340 Oryza punctata OPUNC12G17340 I 0.423
ORGLA12G0165000 Oryza glaberrima ORGLA12G0165000 I 0.423
ORUFI03G28820 Oryza rufipogon ORUFI03G28820 I 0.423
ORUFI12G21410 Oryza rufipogon ORUFI12G21410 I 0.423
YAB2 Populus trichocarpa POPTR_0001s22180 I 0.423
POPTR_0006s06700 Populus trichocarpa POPTR_0006s06700 I 0.423
AFO Arabidopsis lyrata scaffold_403460.1 I 0.423
Sb08g022030 Sorghum bicolor Sb08g022030 I 0.423
Si023308m.g Setaria italica Si023308m.g I 0.423
Si030811m.g Setaria italica Si030811m.g I 0.423
Si037789m.g Setaria italica Si037789m.g I 0.423
Sb02g003390 Sorghum bicolor Sb02g003390 I 0.423
Sb01g013270 Sorghum bicolor Sb01g013270 I 0.423
POPTR_0016s06760 Populus trichocarpa POPTR_0016s06760 I 0.423
POPTR_0018s12990 Populus trichocarpa POPTR_0018s12990 I 0.423
PRUPE_ppa011880m2g Prunus persica PRUPE_ppa011880m2g I 0.423
PRUPE_ppa012028mg Prunus persica PRUPE_ppa012028mg I 0.423
OPUNC07G03670 Oryza punctata OPUNC07G03670 I 0.423
ORUFI07G03450 Oryza rufipogon ORUFI07G03450 I 0.423
OBART03G27740 Oryza barthii OBART03G27740 I 0.423
OBART12G19190 Oryza barthii OBART12G19190 I 0.423
OGLUM03G28370 Oryza glumaepatula OGLUM03G28370 I 0.423
MTR_2g087740 Medicago truncatula MTR_2g087740 I 0.423
OPUNC03G25290 Oryza punctata OPUNC03G25290 I 0.423
MTR_4g050300 Medicago truncatula MTR_4g050300 I 0.423
OB03G35470 Oryza brachyantha OB03G35470 I 0.423
OB12G26050 Oryza brachyantha OB12G26050 I 0.423
MTR_4g114730 Medicago truncatula MTR_4g114730 I 0.423
OGLUM12G20870 Oryza glumaepatula OGLUM12G20870 I 0.423
OLONG_018568 Oryza longistaminata OLONG_018568 I 0.423
OB07G12810 Oryza brachyantha OB07G12810 I 0.423
MLOC_70676 Hordeum vulgare MLOC_70676 I 0.423
MLOC_66260 Hordeum vulgare MLOC_66260 I 0.423
LPERR07G03250 Leersia perrieri LPERR07G03250 I 0.423
ONIVA03G28660 Oryza nivara ONIVA03G28660 I 0.423
OMERI07G02330 Oryza meridionalis OMERI07G02330 I 0.423
OMERI12G13460 Oryza meridionalis OMERI12G13460 I 0.423
ONIVA02G03100 Oryza nivara ONIVA02G03100 I 0.423
Ocbimv22006454m.g Octopus bimaculoides Ocbimv22006454m.g N 0.421
Hsal_18129--FBpp0074818_DROME Harpegnathos saltator Hsal_18129--FBpp0074818_DROME N 0.421
SBAD_0000070901 Soboliphyme baturini SBAD_0000070901 I 0.419
PHUM393920 Pediculus humanus PHUM393920 N 0.419
L798_00437 Zootermopsis nevadensis L798_00437 N 0.419
Gorai.009G367100 Gossypium raimondii Gorai.009G367100 I 0.416
GSMUA_Achr3G30800_001 Musa acuminata GSMUA_Achr3G30800_001 I 0.416
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.415
Si007288m.g Setaria italica Si007288m.g I 0.415
CBN04053 Caenorhabditis brenneri CBN04053 N 0.415
TCNE_0000520101 Toxocara canis TCNE_0000520101 N 0.415
HHAL010080-PA Halyomorpha halys HHAL010080-PA N 0.415
ALUE_0001190701 Ascaris lumbricoides ALUE_0001190701 N 0.415
NEMVEDRAFT_v1g59568 Nematostella vectensis NEMVEDRAFT_v1g59568 N 0.415
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.415
Hba_16915 Heterorhabditis bacteriophora Hba_16915 I 0.415
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.415