hmg1/2 (Ciona intestinalis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSCING00000004075 T327688_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000008399 Sox 10 80
ENSCINP00000008399 Sox 98 166

Links

Other Sox family TFs
Other Ciona intestinalis TFs

263 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSCSAVG00000000341 Ciona savignyi ENSCSAVG00000000341 N 0.700
AMIN005344 Anopheles minimus AMIN005344 N 0.594
AMEM017336 Anopheles merus AMEM017336 N 0.594
ASIS000124 Anopheles sinensis ASIS000124 N 0.594
AARA010318 Anopheles arabiensis AARA010318 N 0.594
AAEL011380 Aedes aegypti AAEL011380 N 0.594
AMEC021909 Anopheles melas AMEC021909 N 0.594
AMAM015540 Anopheles maculatus AMAM015540 N 0.594
ADIR011701 Anopheles dirus ADIR011701 N 0.594
ACUA021022 Anopheles culicifacies ACUA021022 N 0.594
AEPI002924 Anopheles epiroticus AEPI002924 N 0.594
AFAF003948 Anopheles farauti AFAF003948 N 0.594
AFUN010134 Anopheles funestus AFUN010134 N 0.594
AALB006743 Anopheles albimanus AALB006743 N 0.594
AATE018776 Anopheles atroparvus AATE018776 N 0.594
ADAC001494 Anopheles darlingi ADAC001494 N 0.594
AGAP000005 Anopheles gambiae AGAP000005 N 0.594
LCUP007363 Lucilia cuprina LCUP007363 N 0.593
GA11488 Drosophila pseudoobscura FBgn0071539 N 0.592
GE17263 Drosophila yakuba FBgn0234741 N 0.592
GK25058 Drosophila willistoni FBgn0227017 N 0.592
GI10980 Drosophila mojavensis FBgn0133743 N 0.592
Dsp1 Drosophila melanogaster FBgn0011764 N 0.592
GF19115 Drosophila ananassae FBgn0096126 N 0.592
GH12282 Drosophila grimshawi FBgn0119761 N 0.592
GD17278 Drosophila simulans FBgn0188840 N 0.592
GJ19445 Drosophila virilis FBgn0206588 N 0.592
GG17955 Drosophila erecta FBgn0110175 N 0.592
MDOA008812 Musca domestica MDOA008812 N 0.579
CPIJ014043 Culex quinquefasciatus CPIJ014043 N 0.577
CpipJ_CPIJ014043 Culex pipiens CpipJ_CPIJ014043 N 0.577
hmgb1b Gasterosteus aculeatus ENSGACG00000011447 N 0.573
HMEL007340 Heliconius melpomene HMEL007340 N 0.569
AQUA004962 Anopheles quadriannulatus AQUA004962 N 0.563
ENSAMXG00000014832 Astyanax mexicanus ENSAMXG00000014832 N 0.563
ASIS009950 Anopheles sinensis ASIS009950 N 0.561
hmgb1b Takifugu rubripes ENSTRUG00000004822 N 0.559
AATE010886 Anopheles atroparvus AATE010886 N 0.556
PXEA_0002175501 Protopolystoma xenopodis PXEA_0002175501 N 0.554
Cflo_05895--XP_001121384.1_APIME Camponotus floridanus Cflo_05895--XP_001121384.1_APIME N 0.552
ACEP16613 Atta cephalotes ACEP16613 N 0.552
Hsal_13110--XP_001121384.1_APIME Harpegnathos saltator Hsal_13110--XP_001121384.1_APIME N 0.552
ENSPFOG00000008464 Poecilia formosa ENSPFOG00000008464 N 0.552
SINV22586 Solenopsis invicta SINV22586 N 0.552
NV15664 Nasonia vitripennis NV15664 N 0.552
AAC59859 Xenopus laevis AAC59859 N 0.550
AAH73449 Xenopus laevis AAH73449 N 0.550
BGIBMGA001132 Bombyx mori BGIBMGA001132 N 0.549
SMAR013695 Strigamia maritima SMAR013695 N 0.548
ACYPI007949 Acyrthosiphon pisum ACYPI007949 N 0.548
PHUM006290 Pediculus humanus PHUM006290 N 0.548
hmgb1a Oryzias latipes ENSORLG00000003400 N 0.548
hmgb2a Danio rerio ENSDARG00000029722 N 0.545
ENSOARG00000010383 Ovis aries ENSOARG00000010383 N 0.545
ENSPANG00000007527 Papio anubis ENSPANG00000007527 N 0.545
ENSOARG00000015955 Ovis aries ENSOARG00000015955 N 0.545
ENSOARG00000015382 Ovis aries ENSOARG00000015382 N 0.545
HMGB2 Sus scrofa ENSSSCG00000009704 N 0.543
hmgb2.S Xenopus laevis XB-GENE-1000251 N 0.540
Myotis_brandtii_Hmgb2_10018437 Myotis brandtii Myotis_brandtii_Hmgb2_10018437 N 0.540
Hmgb2l1 Rattus norvegicus ENSRNOG00000013167 N 0.539
RGD1561694 Rattus norvegicus ENSRNOG00000029107 N 0.539
Hmgb2 Rattus norvegicus ENSRNOG00000033321 N 0.539
ENSONIG00000005505 Oreochromis niloticus ENSONIG00000005505 N 0.538
ENSPFOG00000004533 Poecilia formosa ENSPFOG00000004533 N 0.538
ENSXMAG00000006844 Xiphophorus maculatus ENSXMAG00000006844 N 0.538
ADIR000367 Anopheles dirus ADIR000367 N 0.538
LDEC006842 Leptinotarsa decemlineata LDEC006842 N 0.538
ENSPMAG00000007397 Petromyzon marinus ENSPMAG00000007397 N 0.537
DAPPUDRAFT_232871 Daphnia pulex DAPPUDRAFT_232871 N 0.533
ENSOCUG00000021132 Oryctolagus cuniculus ENSOCUG00000021132 N 0.531
HMGB2 Macaca mulatta ENSMMUG00000020008 N 0.531
tetur02g08260 Tetranychus urticae tetur02g08260 N 0.529
tetur02g08340 Tetranychus urticae tetur02g08340 N 0.529
hmgb1a Danio rerio ENSDARG00000099175 N 0.523
ENSFCAG00000028961 Felis catus ENSFCAG00000028961 N 0.522
YQE_03203 Dendroctonus ponderosae YQE_03203 N 0.522
hmgb1a Takifugu rubripes ENSTRUG00000008452 N 0.519
ENSOCUG00000004133 Oryctolagus cuniculus ENSOCUG00000004133 N 0.518
BAA06440 Xenopus laevis BAA06440 N 0.515
AAI68534 Xenopus tropicalis AAI68534 N 0.515
T265_12733 Opisthorchis viverrini T265_12733 N 0.514
Sakowv30042012m.g Saccoglossus kowalevskii Sakowv30042012m.g N 0.512
SCUD_0000020101 Schistosoma curassoni SCUD_0000020101 N 0.510
Smp_000980 Schistosoma mansoni Smp_000980 N 0.510
SMTD_0001194601 Schistosoma mattheei SMTD_0001194601 N 0.510
DAPPUDRAFT_306496 Daphnia pulex DAPPUDRAFT_306496 N 0.510
SROB_0000153901 Schistosoma rodhaini SROB_0000153901 N 0.510
ENSOARG00000011611 Ovis aries ENSOARG00000011611 N 0.509
EmuJ_001049000 Echinococcus multilocularis EmuJ_001049000 N 0.509
MCOS_0000526101 Mesocestoides corti MCOS_0000526101 N 0.509
TsM_000115400 Taenia solium TsM_000115400 N 0.509
ENSSSCG00000020770 Sus scrofa ENSSSCG00000020770 N 0.506
LOC688583 Rattus norvegicus ENSRNOG00000050910 N 0.506
ENSSSCG00000024283 Sus scrofa ENSSSCG00000024283 N 0.506
ENSMPUG00000018359 Mustela putorius furo ENSMPUG00000018359 N 0.506
ENSDNOG00000005537 Dasypus novemcinctus ENSDNOG00000005537 N 0.503
ENSCSAG00000013078 Chlorocebus sabaeus ENSCSAG00000013078 N 0.503
ENSCJAG00000033322 Callithrix jacchus ENSCJAG00000033322 N 0.503
ENSCJAG00000022832 Callithrix jacchus ENSCJAG00000022832 N 0.503
HMGB3 Oryctolagus cuniculus ENSOCUG00000024959 N 0.502
Myotis_brandtii_HMGB3_10026974 Myotis brandtii Myotis_brandtii_HMGB3_10026974 N 0.502
hmgb3b Danio rerio ENSDARG00000006408 N 0.501
ENSBTAG00000031711 Bos taurus ENSBTAG00000031711 N 0.500
ENSOCUG00000027747 Oryctolagus cuniculus ENSOCUG00000027747 N 0.500
ENSGMOG00000010060 Gadus morhua ENSGMOG00000010060 N 0.500
ENSGMOG00000010657 Gadus morhua ENSGMOG00000010657 N 0.500
ENSONIG00000019935 Oreochromis niloticus ENSONIG00000019935 N 0.500
HelroG157878 Helobdella robusta HelroG157878 N 0.498
ENSCJAG00000014214 Callithrix jacchus ENSCJAG00000014214 N 0.498
AAH44009 Xenopus laevis AAH44009 N 0.497
D915_00818 Fasciola hepatica D915_00818 N 0.496
RPRC006379 Rhodnius prolixus RPRC006379 N 0.495
Sjc_0051340 Schistosoma japonicum Sjc_0051340 N 0.493
ENSCJAG00000004401 Callithrix jacchus ENSCJAG00000004401 N 0.493
SMU15030256 Schmidtea mediterranea SMU15030256 N 0.492
ENSAMXG00000014031 Astyanax mexicanus ENSAMXG00000014031 N 0.491
hmgb1a Tetraodon nigroviridis ENSTNIG00000009909 N 0.490
AC135696.1 Rattus norvegicus ENSRNOG00000058908 N 0.489
ENSCPOG00000003985 Cavia porcellus ENSCPOG00000003985 N 0.489
ENSOGAG00000028411 Otolemur garnettii ENSOGAG00000028411 N 0.489
ENSSTOG00000000443 Ictidomys tridecemlineatus ENSSTOG00000000443 N 0.489
ENSPANG00000005029 Papio anubis ENSPANG00000005029 N 0.489
ENSOARG00000017078 Ovis aries ENSOARG00000017078 N 0.489
ENSECAG00000005186 Equus caballus ENSECAG00000005186 N 0.489
ENSMMUG00000001275 Macaca mulatta ENSMMUG00000001275 N 0.489
ENSPANG00000011105 Papio anubis ENSPANG00000011105 N 0.489
Hmg1l1 Rattus norvegicus ENSRNOG00000034130 N 0.489
HMGB1 Microcebus murinus ENSMICG00000006213 N 0.489
Hmg1l1 Rattus norvegicus ENSRNOG00000051482 N 0.489
ENSMODG00000009238 Monodelphis domestica ENSMODG00000009238 N 0.489
T265_10726 Opisthorchis viverrini T265_10726 N 0.488
ENSPANG00000010595 Papio anubis ENSPANG00000010595 N 0.487
ENSSTOG00000012404 Ictidomys tridecemlineatus ENSSTOG00000012404 N 0.487
ENSPFOG00000004794 Poecilia formosa ENSPFOG00000004794 N 0.486
hmgb2b Tetraodon nigroviridis ENSTNIG00000004824 N 0.486
hmgb2b Oryzias latipes ENSORLG00000018687 N 0.486
HDID_0000237901 Hymenolepis diminuta HDID_0000237901 N 0.486
HNAJ_0001249801 Hymenolepis nana HNAJ_0001249801 N 0.486
HmN_000466000 Hymenolepis microstoma HmN_000466000 N 0.486
SPU_005572 Strongylocentrotus purpuratus SPU_005572 N 0.486
ENSCJAG00000008378 Callithrix jacchus ENSCJAG00000008378 N 0.485
SMU15002907 Schmidtea mediterranea SMU15002907 N 0.485
PXEA_0000637001 Protopolystoma xenopodis PXEA_0000637001 N 0.485
ENSXMAG00000011106 Xiphophorus maculatus ENSXMAG00000011106 N 0.483
ENSCJAG00000008384 Callithrix jacchus ENSCJAG00000008384 N 0.483
ENSOCUG00000023449 Oryctolagus cuniculus ENSOCUG00000023449 N 0.483
hmgb2b Takifugu rubripes ENSTRUG00000005015 N 0.483
SROB_0000500401 Schistosoma rodhaini SROB_0000500401 N 0.482
Smp_100090 Schistosoma mansoni Smp_100090 N 0.482
AABR07025074.1 Rattus norvegicus ENSRNOG00000032550 N 0.481
ISCW017350 Ixodes scapularis ISCW017350 N 0.481
ENSPPYG00000011668 Pongo abelii ENSPPYG00000011668 N 0.480
ENSOGAG00000032152 Otolemur garnettii ENSOGAG00000032152 N 0.479
ENSTBEG00000009427 Tupaia belangeri ENSTBEG00000009427 N 0.479
Sjc_0031360 Schistosoma japonicum Sjc_0031360 N 0.478
A_00070 Schistosoma haematobium A_00070 N 0.477
ENSMICG00000016224 Microcebus murinus ENSMICG00000016224 N 0.477
SMTD_0001017101 Schistosoma mattheei SMTD_0001017101 N 0.477
SMRZ_0000842001 Schistosoma margrebowiei SMRZ_0000842001 N 0.477
SCUD_0001034301 Schistosoma curassoni SCUD_0001034301 N 0.477
HMGB1 Bos taurus ENSBTAG00000014862 N 0.476
CapteG158220 Capitella teleta CapteG158220 N 0.474
HmN_000761000 Hymenolepis microstoma HmN_000761000 N 0.474
TTAC_0000225801 Hydatigera taeniaeformis TTAC_0000225801 N 0.473
ECANG7_02036 Echinococcus canadensis ECANG7_02036 N 0.473
SMU15027649 Schmidtea mediterranea SMU15027649 N 0.471
ENSECAG00000003655 Equus caballus ENSECAG00000003655 N 0.470
ENSMPUG00000020113 Mustela putorius furo ENSMPUG00000020113 N 0.470
ENSOCUG00000016030 Oryctolagus cuniculus ENSOCUG00000016030 N 0.470
ENSCJAG00000007419 Callithrix jacchus ENSCJAG00000007419 N 0.469
ENSBTAG00000020685 Bos taurus ENSBTAG00000020685 N 0.468
csin112095 Clonorchis sinensis csin112095 N 0.468
TRE_0000690301 Trichobilharzia regenti TRE_0000690301 N 0.467
LOC108350839 Rattus norvegicus ENSRNOG00000038437 N 0.466
SMU15016767 Schmidtea mediterranea SMU15016767 N 0.466
hmgb2b Gasterosteus aculeatus ENSGACG00000001173 N 0.465
fgenesh2_pm.scaffold_24000033 Branchiostoma floridae fgenesh2_pm.scaffold_24000033 N 0.465
ENSTBEG00000012989 Tupaia belangeri ENSTBEG00000012989 N 0.465
GB47828 Apis mellifera GB47828 N 0.464
ENSOGAG00000031959 Otolemur garnettii ENSOGAG00000031959 N 0.463
SSLN_0000493501 Schistocephalus solidus SSLN_0000493501 N 0.462
DILT_0001497901 Diphyllobothrium latum DILT_0001497901 N 0.462
ENSMLUG00000028530 Myotis lucifugus ENSMLUG00000028530 N 0.461
ENSOGAG00000030563 Otolemur garnettii ENSOGAG00000030563 N 0.461
ENSCAFG00000023930 Canis familiaris ENSCAFG00000023930 N 0.460
ENSCJAG00000005187 Callithrix jacchus ENSCJAG00000005187 I 0.459
CGI_10023724 Crassostrea gigas CGI_10023724 N 0.458
MCOS_0000588101 Mesocestoides corti MCOS_0000588101 N 0.458
Myotis_brandtii_Hmgb1_10003213 Myotis brandtii Myotis_brandtii_Hmgb1_10003213 N 0.457
LotgiG200052 Lottia gigantea LotgiG200052 N 0.456
HNAJ_0000227501 Hymenolepis nana HNAJ_0000227501 N 0.455
ENSOGAG00000029272 Otolemur garnettii ENSOGAG00000029272 N 0.455
ENSBTAP00000049357-D1 Bos grunniens ENSBTAP00000049357-D1 N 0.455
SSLN_0001302101 Schistocephalus solidus SSLN_0001302101 N 0.454
ENSTBEG00000016187 Tupaia belangeri ENSTBEG00000016187 N 0.453
HelroG87827 Helobdella robusta HelroG87827 N 0.453
PXEA_0000566701 Protopolystoma xenopodis PXEA_0000566701 N 0.452
LOC100911637 Rattus norvegicus ENSRNOG00000048471 N 0.451
LOC100911637 Rattus norvegicus ENSRNOG00000048094 N 0.451
RGD1563668 Rattus norvegicus ENSRNOG00000038478 N 0.451
ENSBTAG00000005098 Bos taurus ENSBTAG00000005098 N 0.450
Myotis_brandtii_Hmgb1_10026956 Myotis brandtii Myotis_brandtii_Hmgb1_10026956 N 0.450
ENSBTAP00000049034-D1 Bos grunniens ENSBTAP00000049034-D1 N 0.450
ENSPANG00000023341 Papio anubis ENSPANG00000023341 N 0.449
ENSMMUG00000019832 Macaca mulatta ENSMMUG00000019832 N 0.448
BGLB010942 Biomphalaria glabrata BGLB010942 N 0.447
ENSOGAG00000027410 Otolemur garnettii ENSOGAG00000027410 N 0.444
ENSTBEG00000005874 Tupaia belangeri ENSTBEG00000005874 N 0.444
ENSDNOG00000047452 Dasypus novemcinctus ENSDNOG00000047452 N 0.442
ENSTBEG00000017117 Tupaia belangeri ENSTBEG00000017117 N 0.439
augustus_masked-nMf.1.1.scaf01778-processed-gene-0.2 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf01778-processed-gene-0.2 N 0.437
genemark-nMf.1.1.scaf06964-processed-gene-0.3 Meloidogyne floridensis genemark-nMf.1.1.scaf06964-processed-gene-0.3 N 0.437
ENSPANG00000025478 Papio anubis ENSPANG00000025478 N 0.436
ENSMEUG00000011289 Macropus eugenii ENSMEUG00000011289 N 0.435
LOC681067 Rattus norvegicus ENSRNOG00000057013 N 0.435
LOC691030 Rattus norvegicus ENSRNOG00000057926 N 0.435
ENSCJAG00000007095 Callithrix jacchus ENSCJAG00000007095 N 0.434
ENSCSAG00000010707 Chlorocebus sabaeus ENSCSAG00000010707 N 0.434
ENSGGOG00000007804 Gorilla gorilla ENSGGOG00000007804 N 0.432
Hmgb1-ps3 Rattus norvegicus ENSRNOG00000032420 N 0.431
RGD1566225 Rattus norvegicus ENSRNOG00000055742 N 0.430
LOC103694516 Rattus norvegicus ENSRNOG00000049646 N 0.430
RGD1561558 Rattus norvegicus ENSRNOG00000053609 N 0.430
RGD1560585 Rattus norvegicus ENSRNOG00000060534 N 0.430
Aqu1.227714 Amphimedon queenslandica Aqu1.227714 N 0.429
ENSGGOG00000025109 Gorilla gorilla ENSGGOG00000025109 N 0.429
LOC103694517 Rattus norvegicus ENSRNOG00000052269 N 0.428
TsM_000746700 Taenia solium TsM_000746700 N 0.427
TASK_0000795701 Taenia asiatica TASK_0000795701 N 0.427
EmuJ_000941400 Echinococcus multilocularis EmuJ_000941400 N 0.427
ECANG7_07075 Echinococcus canadensis ECANG7_07075 N 0.427
ENSSTOG00000007009 Ictidomys tridecemlineatus ENSSTOG00000007009 N 0.426
LOC108349258 Rattus norvegicus ENSRNOG00000047496 N 0.424
MCINX009638 Melitaea cinxia MCINX009638 N 0.424
ENSPANG00000020000 Papio anubis ENSPANG00000020000 N 0.423
ENSTSYG00000003868 Tarsius syrichta ENSTSYG00000003868 N 0.423
ENSCJAG00000011146 Callithrix jacchus ENSCJAG00000011146 N 0.422
ENSDNOG00000046844 Dasypus novemcinctus ENSDNOG00000046844 N 0.421
ENSOGAG00000032147 Otolemur garnettii ENSOGAG00000032147 N 0.421
ENSOARG00000019147 Ovis aries ENSOARG00000019147 N 0.421
ENSOARG00000005357 Ovis aries ENSOARG00000005357 N 0.421
ENSCJAG00000014197 Callithrix jacchus ENSCJAG00000014197 N 0.421
ENSMMUG00000010106 Macaca mulatta ENSMMUG00000010106 I 0.421
SMRZ_0001808901 Schistosoma margrebowiei SMRZ_0001808901 N 0.420
SROB_0001061001 Schistosoma rodhaini SROB_0001061001 N 0.420
Smp_103530 Schistosoma mansoni Smp_103530 N 0.420
SCUD_0000067701 Schistosoma curassoni SCUD_0000067701 N 0.420
ENSMICG00000010120 Microcebus murinus ENSMICG00000010120 N 0.420
SMRZ_0000146101 Schistosoma margrebowiei SMRZ_0000146101 N 0.420
A_05510 Schistosoma haematobium A_05510 N 0.420
ENSLAFG00000030388 Loxodonta africana ENSLAFG00000030388 N 0.419
ENSOGAG00000010941 Otolemur garnettii ENSOGAG00000010941 N 0.419
ENSMODG00000004606 Monodelphis domestica ENSMODG00000004606 N 0.418
ENSOGAG00000032240 Otolemur garnettii ENSOGAG00000032240 N 0.418
ENSCJAG00000007594 Callithrix jacchus ENSCJAG00000007594 N 0.418
EFV57410 Trichinella spiralis EFV57410 N 0.418
D917_01254 Trichinella nativa D917_01254 N 0.418
HMGB1 Monodelphis domestica ENSMODG00000004443 N 0.417
ENSOGAG00000006589 Otolemur garnettii ENSOGAG00000006589 N 0.417
ENSGGOG00000026945 Gorilla gorilla ENSGGOG00000026945 N 0.416
AC127605.1 Rattus norvegicus ENSRNOG00000033156 N 0.415
ENSTSYG00000012587 Tarsius syrichta ENSTSYG00000012587 N 0.415