hmgb3b (Danio rerio)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSDARG00000006408 T327834_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000007566 Sox 9 79
ENSDARP00000007566 Sox 94 162
ENSDARP00000107780 Sox 9 79
ENSDARP00000107780 Sox 94 161

Links

Other Sox family TFs
Other Danio rerio TFs

266 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAH44009 Xenopus laevis AAH44009 N 0.595
ENSCJAG00000014214 Callithrix jacchus ENSCJAG00000014214 N 0.587
ENSSSCG00000024283 Sus scrofa ENSSSCG00000024283 N 0.586
ENSMPUG00000018359 Mustela putorius furo ENSMPUG00000018359 N 0.586
ENSSSCG00000020770 Sus scrofa ENSSSCG00000020770 N 0.586
LOC688583 Rattus norvegicus ENSRNOG00000050910 N 0.586
ENSBTAG00000031711 Bos taurus ENSBTAG00000031711 N 0.586
ENSCSAG00000013078 Chlorocebus sabaeus ENSCSAG00000013078 N 0.582
ENSCJAG00000033322 Callithrix jacchus ENSCJAG00000033322 N 0.582
hmgb1a Danio rerio ENSDARG00000099175 N 0.581
Myotis_brandtii_HMGB3_10026974 Myotis brandtii Myotis_brandtii_HMGB3_10026974 N 0.581
ENSAMXG00000014832 Astyanax mexicanus ENSAMXG00000014832 N 0.576
hmgb2a Danio rerio ENSDARG00000029722 N 0.569
hmgb1a Oryzias latipes ENSORLG00000003400 N 0.569
HMGB3 Oryctolagus cuniculus ENSOCUG00000024959 N 0.566
ENSSTOG00000012404 Ictidomys tridecemlineatus ENSSTOG00000012404 N 0.565
hmgb2.S Xenopus laevis XB-GENE-1000251 N 0.565
hmgb1a Takifugu rubripes ENSTRUG00000008452 N 0.565
ENSPANG00000010595 Papio anubis ENSPANG00000010595 N 0.563
ENSOCUG00000004133 Oryctolagus cuniculus ENSOCUG00000004133 N 0.563
BAA06440 Xenopus laevis BAA06440 N 0.561
RGD1561694 Rattus norvegicus ENSRNOG00000029107 N 0.560
Hmgb2 Rattus norvegicus ENSRNOG00000033321 N 0.560
Hmgb2l1 Rattus norvegicus ENSRNOG00000013167 N 0.560
Myotis_brandtii_Hmgb2_10018437 Myotis brandtii Myotis_brandtii_Hmgb2_10018437 N 0.558
ENSOARG00000015955 Ovis aries ENSOARG00000015955 N 0.553
ENSOARG00000015382 Ovis aries ENSOARG00000015382 N 0.553
ENSOARG00000010383 Ovis aries ENSOARG00000010383 N 0.553
ENSPANG00000007527 Papio anubis ENSPANG00000007527 N 0.553
hmgb1a Tetraodon nigroviridis ENSTNIG00000009909 N 0.552
HMGB2 Sus scrofa ENSSSCG00000009704 N 0.551
ENSCJAG00000022832 Callithrix jacchus ENSCJAG00000022832 N 0.549
ENSDNOG00000005537 Dasypus novemcinctus ENSDNOG00000005537 N 0.546
hmgb1b Gasterosteus aculeatus ENSGACG00000011447 N 0.546
ENSPANG00000023341 Papio anubis ENSPANG00000023341 N 0.543
ENSMLUG00000028530 Myotis lucifugus ENSMLUG00000028530 N 0.542
ENSCJAG00000004401 Callithrix jacchus ENSCJAG00000004401 N 0.542
ENSOGAG00000031959 Otolemur garnettii ENSOGAG00000031959 N 0.541
ENSCJAG00000007419 Callithrix jacchus ENSCJAG00000007419 N 0.540
ENSTBEG00000009427 Tupaia belangeri ENSTBEG00000009427 N 0.540
ENSOCUG00000021132 Oryctolagus cuniculus ENSOCUG00000021132 N 0.539
hmgb2b Tetraodon nigroviridis ENSTNIG00000004824 N 0.538
ENSPMAG00000007397 Petromyzon marinus ENSPMAG00000007397 N 0.538
ENSPFOG00000008464 Poecilia formosa ENSPFOG00000008464 N 0.538
ENSPFOG00000004533 Poecilia formosa ENSPFOG00000004533 N 0.538
ENSONIG00000019935 Oreochromis niloticus ENSONIG00000019935 N 0.538
hmgb2b Oryzias latipes ENSORLG00000018687 N 0.538
ENSFCAG00000028961 Felis catus ENSFCAG00000028961 N 0.538
ENSPFOG00000004794 Poecilia formosa ENSPFOG00000004794 N 0.538
hmgb2b Takifugu rubripes ENSTRUG00000005015 N 0.535
ENSOGAG00000029272 Otolemur garnettii ENSOGAG00000029272 N 0.535
ENSXMAG00000011106 Xiphophorus maculatus ENSXMAG00000011106 N 0.535
ENSMPUG00000020113 Mustela putorius furo ENSMPUG00000020113 N 0.535
hmgb2b Gasterosteus aculeatus ENSGACG00000001173 N 0.532
ENSGMOG00000010060 Gadus morhua ENSGMOG00000010060 N 0.532
AC135696.1 Rattus norvegicus ENSRNOG00000058908 N 0.531
HMGB1 Bos taurus ENSBTAG00000014862 N 0.531
ENSMODG00000009238 Monodelphis domestica ENSMODG00000009238 N 0.531
ENSMMUG00000001275 Macaca mulatta ENSMMUG00000001275 N 0.531
ENSECAG00000005186 Equus caballus ENSECAG00000005186 N 0.531
ENSCPOG00000003985 Cavia porcellus ENSCPOG00000003985 N 0.531
ENSSTOG00000000443 Ictidomys tridecemlineatus ENSSTOG00000000443 N 0.531
Hmg1l1 Rattus norvegicus ENSRNOG00000034130 N 0.531
ENSPANG00000005029 Papio anubis ENSPANG00000005029 N 0.531
ENSOARG00000017078 Ovis aries ENSOARG00000017078 N 0.531
HMGB1 Microcebus murinus ENSMICG00000006213 N 0.531
ENSPANG00000011105 Papio anubis ENSPANG00000011105 N 0.531
ENSMICG00000016224 Microcebus murinus ENSMICG00000016224 N 0.530
hmgb1b Takifugu rubripes ENSTRUG00000004822 N 0.529
AAH73449 Xenopus laevis AAH73449 N 0.529
AAC59859 Xenopus laevis AAC59859 N 0.529
ENSCJAG00000008384 Callithrix jacchus ENSCJAG00000008384 N 0.528
ENSCJAG00000008378 Callithrix jacchus ENSCJAG00000008378 N 0.527
ENSONIG00000005505 Oreochromis niloticus ENSONIG00000005505 N 0.527
ENSTBEG00000012989 Tupaia belangeri ENSTBEG00000012989 N 0.527
AABR07025074.1 Rattus norvegicus ENSRNOG00000032550 N 0.526
ENSGMOG00000010657 Gadus morhua ENSGMOG00000010657 N 0.523
ENSPPYG00000011668 Pongo abelii ENSPPYG00000011668 N 0.523
ENSCJAG00000005187 Callithrix jacchus ENSCJAG00000005187 I 0.521
ENSXMAG00000006844 Xiphophorus maculatus ENSXMAG00000006844 N 0.521
Hmg1l1 Rattus norvegicus ENSRNOG00000051482 N 0.518
ENSCSAG00000010707 Chlorocebus sabaeus ENSCSAG00000010707 N 0.518
ENSOGAG00000032152 Otolemur garnettii ENSOGAG00000032152 N 0.516
ENSOCUG00000016030 Oryctolagus cuniculus ENSOCUG00000016030 N 0.516
AAI68534 Xenopus tropicalis AAI68534 N 0.515
ENSCSAVG00000000341 Ciona savignyi ENSCSAVG00000000341 N 0.515
ENSPANG00000025478 Papio anubis ENSPANG00000025478 N 0.514
HMGB2 Macaca mulatta ENSMMUG00000020008 N 0.514
ENSECAG00000003655 Equus caballus ENSECAG00000003655 N 0.513
ENSCJAG00000007594 Callithrix jacchus ENSCJAG00000007594 N 0.510
ENSBTAP00000049034-D1 Bos grunniens ENSBTAP00000049034-D1 N 0.509
ENSBTAG00000005098 Bos taurus ENSBTAG00000005098 N 0.509
ENSOCUG00000027747 Oryctolagus cuniculus ENSOCUG00000027747 N 0.508
LOC108350839 Rattus norvegicus ENSRNOG00000038437 N 0.508
ENSCJAG00000011146 Callithrix jacchus ENSCJAG00000011146 N 0.507
ENSOGAG00000028411 Otolemur garnettii ENSOGAG00000028411 N 0.506
SMU15027649 Schmidtea mediterranea SMU15027649 N 0.505
ENSGGOG00000026945 Gorilla gorilla ENSGGOG00000026945 N 0.504
ENSOGAG00000030563 Otolemur garnettii ENSOGAG00000030563 N 0.503
Myotis_brandtii_Hmgb1_10026956 Myotis brandtii Myotis_brandtii_Hmgb1_10026956 N 0.502
ENSCJAG00000003900 Callithrix jacchus ENSCJAG00000003900 N 0.502
ENSOARG00000011611 Ovis aries ENSOARG00000011611 N 0.501
hmg1/2 Ciona intestinalis ENSCING00000004075 N 0.501
Myotis_brandtii_Hmgb1_10003213 Myotis brandtii Myotis_brandtii_Hmgb1_10003213 N 0.501
ENSTBEG00000016187 Tupaia belangeri ENSTBEG00000016187 N 0.496
ENSPANG00000020000 Papio anubis ENSPANG00000020000 N 0.496
RGD1563668 Rattus norvegicus ENSRNOG00000038478 N 0.495
ENSCAFG00000023930 Canis familiaris ENSCAFG00000023930 N 0.494
ENSAMXG00000014031 Astyanax mexicanus ENSAMXG00000014031 N 0.493
LOC100911637 Rattus norvegicus ENSRNOG00000048471 N 0.492
LOC100911637 Rattus norvegicus ENSRNOG00000048094 N 0.492
ENSOCUG00000023449 Oryctolagus cuniculus ENSOCUG00000023449 N 0.491
ENSOGAG00000006589 Otolemur garnettii ENSOGAG00000006589 N 0.491
ENSBTAP00000049357-D1 Bos grunniens ENSBTAP00000049357-D1 N 0.490
ENSOGAG00000027410 Otolemur garnettii ENSOGAG00000027410 N 0.488
ENSDNOG00000047452 Dasypus novemcinctus ENSDNOG00000047452 N 0.487
GH12282 Drosophila grimshawi FBgn0119761 N 0.486
GI10980 Drosophila mojavensis FBgn0133743 N 0.486
ENSCJAG00000007095 Callithrix jacchus ENSCJAG00000007095 N 0.483
Dsp1 Drosophila melanogaster FBgn0011764 N 0.482
GJ19445 Drosophila virilis FBgn0206588 N 0.482
GE17263 Drosophila yakuba FBgn0234741 N 0.482
LCUP007363 Lucilia cuprina LCUP007363 N 0.482
MDOA008812 Musca domestica MDOA008812 N 0.482
GD17278 Drosophila simulans FBgn0188840 N 0.482
GK25058 Drosophila willistoni FBgn0227017 N 0.482
GF19115 Drosophila ananassae FBgn0096126 N 0.482
GG17955 Drosophila erecta FBgn0110175 N 0.482
GA11488 Drosophila pseudoobscura FBgn0071539 N 0.482
ENSGGOG00000025769 Gorilla gorilla ENSGGOG00000025769 N 0.481
ENSBTAG00000015315 Bos taurus ENSBTAG00000015315 N 0.480
ENSBTAP00000052990-D1 Bos grunniens ENSBTAP00000052990-D1 N 0.480
HelroG157726 Helobdella robusta HelroG157726 N 0.480
ENSMODG00000004606 Monodelphis domestica ENSMODG00000004606 N 0.477
ENSMMUG00000010106 Macaca mulatta ENSMMUG00000010106 I 0.477
ENSCJAG00000014197 Callithrix jacchus ENSCJAG00000014197 N 0.476
ENSDNOG00000033430 Dasypus novemcinctus ENSDNOG00000033430 N 0.475
ENSOGAG00000028007 Otolemur garnettii ENSOGAG00000028007 N 0.475
ENSAMEG00000011652 Ailuropoda melanoleuca ENSAMEG00000011652 N 0.474
Hmgb1-ps3 Rattus norvegicus ENSRNOG00000032420 N 0.474
ENSMMUG00000007761 Macaca mulatta ENSMMUG00000007761 N 0.472
ENSMMUP00000010196 Macaca fascicularis ENSMMUP00000010196 N 0.472
ENSGGOG00000007804 Gorilla gorilla ENSGGOG00000007804 N 0.471
LDEC006842 Leptinotarsa decemlineata LDEC006842 N 0.470
LotgiG200052 Lottia gigantea LotgiG200052 N 0.470
ENSMMUG00000018606 Macaca mulatta ENSMMUG00000018606 N 0.470
SMAR013695 Strigamia maritima SMAR013695 N 0.469
Sakowv30042012m.g Saccoglossus kowalevskii Sakowv30042012m.g N 0.468
HMGB1 Monodelphis domestica ENSMODG00000004443 N 0.467
Aqu1.227714 Amphimedon queenslandica Aqu1.227714 N 0.466
tetur02g08340 Tetranychus urticae tetur02g08340 N 0.464
tetur02g08260 Tetranychus urticae tetur02g08260 N 0.464
ENSOGAG00000010941 Otolemur garnettii ENSOGAG00000010941 N 0.462
ENSCJAG00000033913 Callithrix jacchus ENSCJAG00000033913 N 0.460
ENSTBEG00000014925 Tupaia belangeri ENSTBEG00000014925 N 0.460
ACYPI007949 Acyrthosiphon pisum ACYPI007949 N 0.460
ENSDNOG00000046844 Dasypus novemcinctus ENSDNOG00000046844 N 0.459
ENSMEUG00000011289 Macropus eugenii ENSMEUG00000011289 N 0.459
PHUM006290 Pediculus humanus PHUM006290 N 0.459
ENSGGOG00000027139 Gorilla gorilla ENSGGOG00000027139 N 0.458
ENSOGAG00000033658 Otolemur garnettii ENSOGAG00000033658 N 0.458
ENSGGOG00000023427 Gorilla gorilla ENSGGOG00000023427 N 0.458
ENSSTOG00000007009 Ictidomys tridecemlineatus ENSSTOG00000007009 N 0.457
ENSMICG00000010120 Microcebus murinus ENSMICG00000010120 N 0.456
ASIS000124 Anopheles sinensis ASIS000124 N 0.454
T265_12733 Opisthorchis viverrini T265_12733 N 0.454
ENSOGAG00000032325 Otolemur garnettii ENSOGAG00000032325 N 0.454
ENSBTAG00000020685 Bos taurus ENSBTAG00000020685 N 0.453
ENSOGAG00000007401 Otolemur garnettii ENSOGAG00000007401 N 0.453
CapteG158220 Capitella teleta CapteG158220 N 0.452
ACEP16613 Atta cephalotes ACEP16613 N 0.451
NV15664 Nasonia vitripennis NV15664 N 0.451
D915_00818 Fasciola hepatica D915_00818 N 0.451
Cflo_05895--XP_001121384.1_APIME Camponotus floridanus Cflo_05895--XP_001121384.1_APIME N 0.451
SINV22586 Solenopsis invicta SINV22586 N 0.451
Hsal_13110--XP_001121384.1_APIME Harpegnathos saltator Hsal_13110--XP_001121384.1_APIME N 0.451
ACUA021022 Anopheles culicifacies ACUA021022 N 0.450
ADIR011701 Anopheles dirus ADIR011701 N 0.450
AATE018776 Anopheles atroparvus AATE018776 N 0.450
AAEL011380 Aedes aegypti AAEL011380 N 0.450
ADAC001494 Anopheles darlingi ADAC001494 N 0.450
AGAP000005 Anopheles gambiae AGAP000005 N 0.450
AALB006743 Anopheles albimanus AALB006743 N 0.450
AARA010318 Anopheles arabiensis AARA010318 N 0.450
AFAF003948 Anopheles farauti AFAF003948 N 0.450
AMEC021909 Anopheles melas AMEC021909 N 0.450
AMAM015540 Anopheles maculatus AMAM015540 N 0.450
ENSTSYG00000012587 Tarsius syrichta ENSTSYG00000012587 N 0.450
AMEM017336 Anopheles merus AMEM017336 N 0.450
CpipJ_CPIJ014043 Culex pipiens CpipJ_CPIJ014043 N 0.450
AMIN005344 Anopheles minimus AMIN005344 N 0.450
AFUN010134 Anopheles funestus AFUN010134 N 0.450
CPIJ014043 Culex quinquefasciatus CPIJ014043 N 0.450
AEPI002924 Anopheles epiroticus AEPI002924 N 0.450
HelroG157878 Helobdella robusta HelroG157878 N 0.449
ENSOARG00000002938 Ovis aries ENSOARG00000002938 N 0.448
ENSOGAG00000032240 Otolemur garnettii ENSOGAG00000032240 N 0.448
ENSOGAG00000029748 Otolemur garnettii ENSOGAG00000029748 N 0.446
ENSGGOG00000025109 Gorilla gorilla ENSGGOG00000025109 N 0.446
ENSOGAG00000032147 Otolemur garnettii ENSOGAG00000032147 N 0.444
Sjc_0051340 Schistosoma japonicum Sjc_0051340 N 0.444
ENSTBEG00000005874 Tupaia belangeri ENSTBEG00000005874 N 0.444
ENSMMUG00000019832 Macaca mulatta ENSMMUG00000019832 N 0.444
ENSOARG00000005357 Ovis aries ENSOARG00000005357 N 0.443
ENSCSAG00000015385 Chlorocebus sabaeus ENSCSAG00000015385 N 0.443
SPU_005572 Strongylocentrotus purpuratus SPU_005572 N 0.442
ENSMMUP00000003419 Macaca fascicularis ENSMMUP00000003419 N 0.442
ENSOGAG00000033437 Otolemur garnettii ENSOGAG00000033437 N 0.442
ENSOGAG00000030052 Otolemur garnettii ENSOGAG00000030052 N 0.440
AABR07019870.1 Rattus norvegicus ENSRNOG00000038033 N 0.439
ENSCJAG00000007044 Callithrix jacchus ENSCJAG00000007044 N 0.439
TsM_000115400 Taenia solium TsM_000115400 N 0.438
EmuJ_001049000 Echinococcus multilocularis EmuJ_001049000 N 0.438
A_00070 Schistosoma haematobium A_00070 N 0.438
MCOS_0000526101 Mesocestoides corti MCOS_0000526101 N 0.438
SCUD_0001034301 Schistosoma curassoni SCUD_0001034301 N 0.438
SMRZ_0000842001 Schistosoma margrebowiei SMRZ_0000842001 N 0.438
SMTD_0001017101 Schistosoma mattheei SMTD_0001017101 N 0.438
YQE_03203 Dendroctonus ponderosae YQE_03203 N 0.438
ENSMMUG00000002541 Macaca mulatta ENSMMUG00000002541 I 0.436
SROB_0000500401 Schistosoma rodhaini SROB_0000500401 N 0.435
HMEL007340 Heliconius melpomene HMEL007340 N 0.435
Smp_100090 Schistosoma mansoni Smp_100090 N 0.435
ENSCJAG00000031139 Callithrix jacchus ENSCJAG00000031139 I 0.435
ENSCSAG00000017502 Chlorocebus sabaeus ENSCSAG00000017502 N 0.435
TRE_0000690301 Trichobilharzia regenti TRE_0000690301 N 0.434
ENSCSAG00000001500 Chlorocebus sabaeus ENSCSAG00000001500 N 0.434
ENSLAFG00000030388 Loxodonta africana ENSLAFG00000030388 N 0.434
ENSMMUG00000002662 Macaca mulatta ENSMMUG00000002662 N 0.433
ENSOGAG00000034801 Otolemur garnettii ENSOGAG00000034801 N 0.433
SCUD_0000020101 Schistosoma curassoni SCUD_0000020101 N 0.432
SMTD_0001194601 Schistosoma mattheei SMTD_0001194601 N 0.432
SROB_0000153901 Schistosoma rodhaini SROB_0000153901 N 0.432
Smp_000980 Schistosoma mansoni Smp_000980 N 0.432
BGIBMGA001132 Bombyx mori BGIBMGA001132 N 0.431
ENSTSYG00000003868 Tarsius syrichta ENSTSYG00000003868 N 0.431
ENSOGAG00000033253 Otolemur garnettii ENSOGAG00000033253 N 0.431
ADIR000367 Anopheles dirus ADIR000367 N 0.431
PXEA_0002175501 Protopolystoma xenopodis PXEA_0002175501 N 0.429
ENSTBEG00000015340 Tupaia belangeri ENSTBEG00000015340 N 0.429
ENSTBEG00000017117 Tupaia belangeri ENSTBEG00000017117 N 0.427
ENSOARG00000019147 Ovis aries ENSOARG00000019147 N 0.427
ENSCJAG00000014991 Callithrix jacchus ENSCJAG00000014991 N 0.426
ENSOGAG00000027183 Otolemur garnettii ENSOGAG00000027183 N 0.426
ENSOARG00000020499 Ovis aries ENSOARG00000020499 N 0.426
ISCW017350 Ixodes scapularis ISCW017350 N 0.425
AATE010886 Anopheles atroparvus AATE010886 N 0.425
ENSDNOG00000041663 Dasypus novemcinctus ENSDNOG00000041663 N 0.424
HelroG87827 Helobdella robusta HelroG87827 N 0.421
T265_10726 Opisthorchis viverrini T265_10726 N 0.421
ASIS009950 Anopheles sinensis ASIS009950 N 0.419
AQUA004962 Anopheles quadriannulatus AQUA004962 N 0.419
MCOS_0000588101 Mesocestoides corti MCOS_0000588101 N 0.419
ENSMMUP00000039817 Macaca fascicularis ENSMMUP00000039817 N 0.419
AABR07045786.1 Rattus norvegicus ENSRNOG00000055923 N 0.418
AABR07030543.1 Rattus norvegicus ENSRNOG00000051634 N 0.418
TTAC_0000225801 Hydatigera taeniaeformis TTAC_0000225801 N 0.417
LOC681067 Rattus norvegicus ENSRNOG00000057013 N 0.417
LOC691030 Rattus norvegicus ENSRNOG00000057926 N 0.417
DAPPUDRAFT_306496 Daphnia pulex DAPPUDRAFT_306496 N 0.417
ECANG7_02036 Echinococcus canadensis ECANG7_02036 N 0.417
BGLB010942 Biomphalaria glabrata BGLB010942 N 0.416
AC127605.1 Rattus norvegicus ENSRNOG00000033156 N 0.415
PXEA_0000637001 Protopolystoma xenopodis PXEA_0000637001 N 0.415
SMU15030256 Schmidtea mediterranea SMU15030256 N 0.415