CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSLOCG00000011834
(
Lepisosteus oculatus
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
ENSLOCG00000011834
T328280_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Sox10
M00826_2.00
Mus musculus
NNNNWBAAT
ATTVWNNNN
PBM
Weirauch et al.(2013)
pTH1729
0.467
0.945
SOX10
M03491_2.00
Homo sapiens
AACAATTKCAGTGTT
AACACTGMAATTGTT
SELEX
Jolma et al.(2013)
SOX10_1
0.467
0.945
SOX10
M03492_2.00
Homo sapiens
AACAATRTKCAGTGTT
AACACTGMAYATTGTT
SELEX
Jolma et al.(2013)
SOX10_2
0.467
0.945
SOX10
M03493_2.00
Homo sapiens
ATCAATTKCAGTGAT
ATCACTGMAATTGAT
SELEX
Jolma et al.(2013)
SOX10_3
0.467
0.945
SOX10
M03494_2.00
Homo sapiens
ATGAATTKCAGTCAT
ATGACTGMAATTCAT
SELEX
Jolma et al.(2013)
SOX10_4
0.467
0.945
SOX10
M03495_2.00
Homo sapiens
TGAATGTKCAGTCA
TGACTGMACATTCA
SELEX
Jolma et al.(2013)
SOX10_5
0.467
0.945
Sox10
M03535_2.00
Mus musculus
AACAATTKCAGTGTT
AACACTGMAATTGTT
SELEX
Jolma et al.(2013)
Sox10_1
0.467
0.945
Sox10
M03536_2.00
Mus musculus
ATCAATTKCAGTGAT
ATCACTGMAATTGAT
SELEX
Jolma et al.(2013)
Sox10_2
0.467
0.945
Sox10
M03537_2.00
Mus musculus
ATGAATTDCAGTCAT
ATGACTGHAATTCAT
SELEX
Jolma et al.(2013)
Sox10_3
0.467
0.945
SOX10
M05759_2.00
Homo sapiens
AACAATRNNNYATTGTT
AACAATRNNNYATTGTT
SELEX
Yin et al.(2017)
SOX10_eDBD_HT-SELEX
0.467
0.945
SOX10
M05761_2.00
Homo sapiens
NACAATRVNNBYATTGTN
NACAATRVNNBYATTGTN
SELEX
Yin et al.(2017)
SOX10_FL_HT-SELEX
0.467
0.945
SOX10
M05891_2.00
Homo sapiens
BBCWWTGTTH
DAACAWWGVV
SMiLE-seq
Isakova et al.(2017)
SOX10
0.467
0.945
SOX10
M08165_2.00
Homo sapiens
NNVACAAAGVN
NBCTTTGTBNN
ChIP-seq
Mathelier et al.(2014)
MA0442.2
0.467
0.945
SOX10
M09387_2.00
Homo sapiens
VAADRVVNBCWTTGTN
NACAAWGVNBBYHTTB
Misc
Kulakovskiy et al.(2013)
SOX10_HUMAN.H11MO.0.B
0.467
0.945
Sox10
M09403_2.00
Mus musculus
VAADRVVNBCWTTGTN
NACAAWGVNBBYHTTB
Misc
Kulakovskiy et al.(2013)
SOX10_MOUSE.H11MO.0.B
0.467
0.945
SOX10
M11296_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX10_Q3
0.467
0.945
SOX10
M11297_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX10_Q6_01
0.467
0.945
SOX10
M11298_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX10_Q6
0.467
0.945
SOX10
M05760_2.00
Homo sapiens
AACAATRSNSYATTGTT
AACAATRSNSYATTGTT
SELEX
Yin et al.(2017)
SOX10_eDBD_Methyl-HT-SELEX
0.467
0.945
SOX10
M05762_2.00
Homo sapiens
NACAATRVNNBYATTGTN
NACAATRVNNBYATTGTN
SELEX
Yin et al.(2017)
SOX10_FL_Methyl-HT-SELEX
0.467
0.945
SOX9
M03501_2.00
Homo sapiens
DDACAATRV
BYATTGTHH
SELEX
Jolma et al.(2013)
SOX9_1
0.467
0.909
SOX9
M03502_2.00
Homo sapiens
AACAATRTGCAGTGTT
AACACTGCAYATTGTT
SELEX
Jolma et al.(2013)
SOX9_2
0.467
0.909
SOX9
M03503_2.00
Homo sapiens
ATCAATRTKCAGTGAT
ATCACTGMAYATTGAT
SELEX
Jolma et al.(2013)
SOX9_3
0.467
0.909
SOX9
M03504_2.00
Homo sapiens
ATGAATRTKCAGTCAT
ATGACTGMAYATTCAT
SELEX
Jolma et al.(2013)
SOX9_4
0.467
0.909
SOX9
M03505_2.00
Homo sapiens
RAACAATTKCAGTGTTH
DAACACTGMAATTGTTY
SELEX
Jolma et al.(2013)
SOX9_5
0.467
0.909
SOX9
M03506_2.00
Homo sapiens
NATCAATKKYAGTGATN
NATCACTRMMATTGATN
SELEX
Jolma et al.(2013)
SOX9_6
0.467
0.909
SOX9
M03507_2.00
Homo sapiens
NATGAATTKCAGTCATN
NATGACTGMAATTCATN
SELEX
Jolma et al.(2013)
SOX9_7
0.467
0.909
SOX9
M05767_2.00
Homo sapiens
HDAACAATRV
BYATTGTTHD
SELEX
Yin et al.(2017)
SOX9_eDBD_HT-SELEX
0.467
0.909
SOX9
M02716_2.00
Homo sapiens
DAACAATRG
CYATTGTTH
SELEX
Mathelier et al.(2014)
MA0077.1
0.467
0.909
SOX9
M09389_2.00
Homo sapiens
RMACAAWGVNNBYHTT
AADRVNNBCWTTGTKY
Misc
Kulakovskiy et al.(2013)
SOX9_HUMAN.H11MO.0.B
0.467
0.909
Sox9
M09399_2.00
Mus musculus
RMACAAWGVNNBYHTT
AADRVNNBCWTTGTKY
Misc
Kulakovskiy et al.(2013)
SOX9_MOUSE.H11MO.0.A
0.467
0.909
SOX9
M11304_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX9_09
0.467
0.909
SOX9
M11305_2.00
Homo sapiens
NNNDAACAATRRNN
NNYYATTGTTHNNN
Transfac
Matys et al.(2006)
V$SOX9_B1
0.467
0.909
SOX9
M11306_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX9_Q4
0.467
0.909
SOX9
M11307_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX9_Q5
0.467
0.909
SOX9
M05768_2.00
Homo sapiens
NNNACAATRS
SYATTGTNNN
SELEX
Yin et al.(2017)
SOX9_eDBD_Methyl-HT-SELEX
0.467
0.909
Sox8
M00197_2.00
Mus musculus
NNNWBAAT
ATTVWNNN
PBM
Badis et al.(2009)
Sox8_1733
0.460
0.891
SOX8
M03483_2.00
Homo sapiens
AACAATRTGCAGTGTT
AACACTGCAYATTGTT
SELEX
Jolma et al.(2013)
SOX8_1
0.460
0.891
SOX8
M03484_2.00
Homo sapiens
ATGAATTKCAGTC
GACTGMAATTCAT
SELEX
Jolma et al.(2013)
SOX8_2
0.460
0.891
SOX8
M03485_2.00
Homo sapiens
RAACAATTKCAGTGTTN
NAACACTGMAATTGTTY
SELEX
Jolma et al.(2013)
SOX8_3
0.460
0.891
SOX8
M03486_2.00
Homo sapiens
HATCAATTKCAGTGATN
NATCACTGMAATTGATD
SELEX
Jolma et al.(2013)
SOX8_4
0.460
0.891
SOX8
M03487_2.00
Homo sapiens
TGAATRTKCAGTCA
TGACTGMAYATTCA
SELEX
Jolma et al.(2013)
SOX8_5
0.460
0.891
SOX8
M03488_2.00
Homo sapiens
AACAATTDCAGTGTT
AACACTGHAATTGTT
SELEX
Jolma et al.(2013)
SOX8_6
0.460
0.891
SOX8
M03489_2.00
Homo sapiens
ATGAATTKCAGTC
GACTGMAATTCAT
SELEX
Jolma et al.(2013)
SOX8_7
0.460
0.891
SOX8
M03490_2.00
Homo sapiens
MATCAATTGCAGTGATK
MATCACTGCAATTGATK
SELEX
Jolma et al.(2013)
SOX8_8
0.460
0.891
SOX8
M05749_2.00
Homo sapiens
NDAACAATRV
BYATTGTTHN
SELEX
Yin et al.(2017)
SOX8_eDBD_HT-SELEX
0.460
0.891
SOX8
M05751_2.00
Homo sapiens
ACAATRVNNBYATTGT
ACAATRVNNBYATTGT
SELEX
Yin et al.(2017)
SOX8_FL_HT-SELEX
0.460
0.891
SOX8
M05750_2.00
Homo sapiens
BYATTGTTNN
NNAACAATRV
SELEX
Yin et al.(2017)
SOX8_eDBD_Methyl-HT-SELEX
0.460
0.891
SOX8
M05752_2.00
Homo sapiens
ACAATRVNNBYATTGT
ACAATRVNNBYATTGT
SELEX
Yin et al.(2017)
SOX8_FL_Methyl-HT-SELEX
0.460
0.891
Sox7
M00209_2.00
Mus musculus
NNNWBAAT
ATTVWNNN
PBM
Badis et al.(2009)
Sox7_3460
0.421
0.636
SOX7
M03516_2.00
Homo sapiens
AACAATRDNHAKTGTT
AACAMTDNHYATTGTT
SELEX
Jolma et al.(2013)
SOX7_1
0.421
0.636
SOX7
M03517_2.00
Homo sapiens
DAACAATKDYAKTGTTN
NAACAMTRHMATTGTTH
SELEX
Jolma et al.(2013)
SOX7_2
0.421
0.636
SOX7
M03518_2.00
Homo sapiens
NATGAATKDCAKTCATN
NATGAMTGHMATTCATN
SELEX
Jolma et al.(2013)
SOX7_3
0.421
0.636
SOX7
M05787_2.00
Homo sapiens
ACAATDNHATTGT
ACAATDNHATTGT
SELEX
Yin et al.(2017)
SOX7_eDBD_HT-SELEX
0.421
0.636
SOX7
M11325_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX7_Q2
0.421
0.636
SOX7
M05788_2.00
Homo sapiens
ACAATDNHATTGT
ACAATDNHATTGT
SELEX
Yin et al.(2017)
SOX7_eDBD_Methyl-HT-SELEX
0.421
0.636
Sox18
M00204_2.00
Mus musculus
NNNWBAAT
ATTVWNNN
PBM
Badis et al.(2009)
Sox18_3506
0.418
0.636
SOX18
M03529_2.00
Homo sapiens
AACAATDNCATTGTT
AACAATGNHATTGTT
SELEX
Jolma et al.(2013)
SOX18_1
0.418
0.636
SOX18
M03530_2.00
Homo sapiens
ATCAATWDCATTGAT
ATCAATGHWATTGAT
SELEX
Jolma et al.(2013)
SOX18_2
0.418
0.636
SOX18
M03531_2.00
Homo sapiens
ATGAATWYCATTCAT
ATGAATGRWATTCAT
SELEX
Jolma et al.(2013)
SOX18_3
0.418
0.636
SOX18
M05791_2.00
Homo sapiens
VACRAYGV
BCRTYGTB
SELEX
Yin et al.(2017)
SOX18_eDBD_HT-SELEX
0.418
0.636
SOX18
M11334_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX18_Q5_01
0.418
0.636
SOX18
M11335_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX18_Q5
0.418
0.636
SOX18
M05792_2.00
Homo sapiens
BYATTGTN
NACAATRV
SELEX
Yin et al.(2017)
SOX18_eDBD_Methyl-HT-SELEX
0.418
0.636
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLOCP00000014551
Sox
1
55
ARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRKQHKKDYPEYK
Links
Other
Sox
family TFs
Other
Lepisosteus oculatus
TFs
402 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy