ENSLOCG00000012276 (Lepisosteus oculatus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSLOCG00000012276 T328282_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Lef1
M00200_2.00
Mus musculus
NSWTCAAAVN

NBTTTGAWSN
PBM
Badis et al.(2009)
Lef1_3504
0.741 1.000
LEF1
M03511_2.00
Homo sapiens
NRAGATCAAAGRVWW

WWBYCTTTGATCTYN
SELEX
Jolma et al.(2013)
LEF1_1
0.741 1.000
LEF1
M05771_2.00
Homo sapiens
NSATCAAAS

STTTGATSN
SELEX
Yin et al.(2017)
LEF1_eDBD_HT-SELEX_1
0.741 1.000
LEF1
M05772_2.00
Homo sapiens
WCATCGRGRCGCTGW

WCAGCGYCYCGATGW
SELEX
Yin et al.(2017)
LEF1_eDBD_HT-SELEX_2
0.741 1.000
LEF1
M05775_2.00
Homo sapiens
ASATCAAAG

CTTTGATST
SELEX
Yin et al.(2017)
LEF1_FL_HT-SELEX_1
0.741 1.000
LEF1
M05776_2.00
Homo sapiens
ACATCGRGRCGCTGW

WCAGCGYCYCGATGT
SELEX
Yin et al.(2017)
LEF1_FL_HT-SELEX_2
0.741 1.000
LEF1
M05895_2.00
Homo sapiens
WTCAAAGNNN

NNNCTTTGAW
SMiLE-seq
Isakova et al.(2017)
LEF1
0.741 1.000
LEF1
M09392_2.00
Homo sapiens
BSYTTTSWNNTBYH

DRVANNWSAAARSV
Misc
Kulakovskiy et al.(2013)
LEF1_HUMAN.H11MO.0.A
0.741 1.000
Lef1
M09402_2.00
Mus musculus
BSYTTTSWNNTBYH

DRVANNWSAAARSV
Misc
Kulakovskiy et al.(2013)
LEF1_MOUSE.H11MO.0.B
0.741 1.000
LEF1
M11311_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q2_01
0.741 1.000
LEF1
M11312_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q3
0.741 1.000
LEF1
M11313_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q4
0.741 1.000
LEF1
M11314_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q5_01
0.741 1.000
LEF1
M11315_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q5
0.741 1.000
LEF1
M05773_2.00
Homo sapiens
ASATCAAAG

CTTTGATST
SELEX
Yin et al.(2017)
LEF1_eDBD_Methyl-HT-SELEX_1
0.741 1.000
LEF1
M05774_2.00
Homo sapiens
WCATCGRGGCGCTGW

WCAGCGCCYCGATGW
SELEX
Yin et al.(2017)
LEF1_eDBD_Methyl-HT-SELEX_2
0.741 1.000
LEF1
M05777_2.00
Homo sapiens
ASATCAAAG

CTTTGATST
SELEX
Yin et al.(2017)
LEF1_FL_Methyl-HT-SELEX_1
0.741 1.000
LEF1
M05778_2.00
Homo sapiens
ACATCGRGRCGCTGW

WCAGCGYCYCGATGT
SELEX
Yin et al.(2017)
LEF1_FL_Methyl-HT-SELEX_2
0.741 1.000
Tcf7l2
M00198_2.00
Mus musculus
NSWTCAAAVN

NBTTTGAWSN
PBM
Badis et al.(2009)
Tcf7l2_3461
0.741 0.986
Tcf7l2
M02646_2.00
Mus musculus
SATCAAAGN

NCTTTGATS
SELEX
Hallikas et al.(2006)
Tcf4
0.741 0.986
TCF7L2
M08167_2.00
Homo sapiens
NVASWTCAAAGVVN

NBBCTTTGAWSTBN
ChIP-seq
Mathelier et al.(2014)
MA0523.1
0.741 0.986
TCF7L2
M09393_2.00
Homo sapiens
DGCAGSTGKS

SMCASCTGCH
Misc
Kulakovskiy et al.(2013)
ITF2_HUMAN.H11MO.0.C
0.741 0.986
TCF7L2
M09394_2.00
Homo sapiens
VVASWTCAAAGVV

BBCTTTGAWSTBB
Misc
Kulakovskiy et al.(2013)
TF7L2_HUMAN.H11MO.0.A
0.741 0.986
Tcf7l2
M09401_2.00
Mus musculus
VVASWTCAAAGVV

BBCTTTGAWSTBB
Misc
Kulakovskiy et al.(2013)
TF7L2_MOUSE.H11MO.0.A
0.741 0.986
TCF7L2
M09638_2.00
Homo sapiens
CCTTTGAWST

ASWTCAAAGG
Misc
Heinz et al.(2010)
K562-TCF7L2_GSE29196
0.741 0.986
TCF7L2
M11316_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF4_Q5_01
0.741 0.986
TCF7L2
M11317_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF4_Q5_02
0.741 0.986
TCF7L2
M11318_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF4_Q5
0.741 0.986
TCF7L2
M11319_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF7L2_06
0.741 0.986
Tcf7l1
M00207_2.00
Mus musculus
NNNNWWDN

NHWWNNNN
PBM
Badis et al.(2009)
Tcf3_3787
0.741 0.913
TCF7L1
M03512_2.00
Homo sapiens
AAAGATCAAAGG

CCTTTGATCTTT
SELEX
Jolma et al.(2013)
TCF7L1_1
0.741 0.913
TCF7L1
M05779_2.00
Homo sapiens
RSATCAAAG

CTTTGATSY
SELEX
Yin et al.(2017)
TCF7L1_eDBD_HT-SELEX_1
0.741 0.913
TCF7L1
M05780_2.00
Homo sapiens
ACATCGRGRCGCTGW

WCAGCGYCYCGATGT
SELEX
Yin et al.(2017)
TCF7L1_eDBD_HT-SELEX_2
0.741 0.913
TCF7L1
M09395_2.00
Homo sapiens
NBBCTTTGAWSTB

VASWTCAAAGVVN
Misc
Kulakovskiy et al.(2013)
TF7L1_HUMAN.H11MO.0.B
0.741 0.913
Tcf7l1
M09406_2.00
Mus musculus
BBCTTTGAWST

ASWTCAAAGVV
Misc
Kulakovskiy et al.(2013)
TF7L1_MOUSE.H11MO.0.A
0.741 0.913
Tcf7l1
M09407_2.00
Mus musculus
NDGCAGSTGBB

VVCASCTGCHN
Misc
Kulakovskiy et al.(2013)
TFE2_MOUSE.H11MO.0.A
0.741 0.913
TCF7L1
M11320_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF3_01
0.741 0.913
TCF7L1
M11321_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF3_Q6_01
0.741 0.913
TCF7L1
M11322_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF3_Q6
0.741 0.913
TCF7L1
M05781_2.00
Homo sapiens
CTTTGATSY

RSATCAAAG
SELEX
Yin et al.(2017)
TCF7L1_eDBD_Methyl-HT-SELEX_1
0.741 0.913
TCF7L1
M05782_2.00
Homo sapiens
ACATCGRGRCGCTGW

WCAGCGYCYCGATGT
SELEX
Yin et al.(2017)
TCF7L1_eDBD_Methyl-HT-SELEX_2
0.741 0.913
pan
M06451_2.00
Drosophila melanogaster
DWYCAAAD

HTTTGRWH
B1H
Zhu et al.(2011)
pan_FlyReg_FBgn0085432
0.720 0.913
pan
M08428_2.00
Drosophila melanogaster
WHNAAAVRNRSCGM

KCGSYNYBTTTNDW
ChIP-chip
Mathelier et al.(2014)
MA0237.2
0.720 0.913
pan
M11337_2.00
Drosophila melanogaster
AAGATCAAAGG

CCTTTGATCTT
Transfac
Matys et al.(2006)
I$TCF_1
0.720 0.913
pan
M11338_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$TCF_Q6
0.720 0.913
Tcf7
M00193_2.00
Mus musculus
HNHNNNNNN

NNNNNNDND
PBM
Badis et al.(2009)
Tcf7_0950
0.716 0.971
Tcf7
M03532_2.00
Mus musculus
AAASATCAAAGV

BCTTTGATSTTT
SELEX
Jolma et al.(2013)
Tcf7_1
0.716 0.971
TCF7
M05755_2.00
Homo sapiens
DSATCAAWS

SWTTGATSH
SELEX
Yin et al.(2017)
TCF7_eDBD_HT-SELEX_1
0.716 0.971
TCF7
M05756_2.00
Homo sapiens
WCWKCGYCYCGWTGW

WCAWCGRGRCGMWGW
SELEX
Yin et al.(2017)
TCF7_eDBD_HT-SELEX_2
0.716 0.971
TCF7
M05890_2.00
Homo sapiens
NNASATCAAASNN

NNSTTTGATSTNN
SMiLE-seq
Isakova et al.(2017)
TCF7
0.716 0.971
TCF7
M09386_2.00
Homo sapiens
NBBCTTTSAWSTBNBN

NVNVASWTSAAAGVVN
Misc
Kulakovskiy et al.(2013)
TCF7_HUMAN.H11MO.0.A
0.716 0.971
Tcf7
M09400_2.00
Mus musculus
VVRVADSAAARVVVNV

BNBBBYTTTSHTBYBB
Misc
Kulakovskiy et al.(2013)
TCF7_MOUSE.H11MO.0.A
0.716 0.971
TCF7
M11294_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF1_Q5_01
0.716 0.971
TCF7
M11295_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF1_Q5
0.716 0.971
TCF7
M05757_2.00
Homo sapiens
RSATCAAAS

STTTGATSY
SELEX
Yin et al.(2017)
TCF7_eDBD_Methyl-HT-SELEX_1
0.716 0.971
TCF7
M05758_2.00
Homo sapiens
WCAWCGRGRCGMWGW

WCWKCGYCYCGWTGW
SELEX
Yin et al.(2017)
TCF7_eDBD_Methyl-HT-SELEX_2
0.716 0.971
pop-1
M00712_2.00
Caenorhabditis elegans
NNHDWVNNNN

NNNNBWHDNN
PBM
Narasimhan et al.(2015)
pTH9135
0.515 0.551
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLOCP00000015111 Sox 297 365

Links

Other Sox family TFs
Other Lepisosteus oculatus TFs

512 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000011926 Ailuropoda melanoleuca ENSAMEG00000011926 N 0.000
Alligator_sinensis_CCG014201.1 Alligator sinensis Alligator_sinensis_CCG014201.1 N 0.000
ENSAPLG00000006054 Anas platyrhynchos ENSAPLG00000006054 I 0.000
ENSAPLG00000012837 Anas platyrhynchos ENSAPLG00000012837 N 0.000
MYRFL Anolis carolinensis ENSACAG00000004738 N 0.000
Afo_R009725 Aptenodytes forsteri Afo_R009725 N 0.000
Afo_R010549 Aptenodytes forsteri Afo_R010549 I 0.000
ENSAMXG00000021027 Astyanax mexicanus ENSAMXG00000021027 N 0.000
ENSBTAP00000019581-D1 Bos grunniens ENSBTAP00000019581-D1 N 0.000
MYRFL Bos taurus ENSBTAG00000014829 N 0.000
Brh_R001107 Buceros rhinoceros Brh_R001107 N 0.000
Brh_R007745 Buceros rhinoceros Brh_R007745 I 0.000
ENSCJAG00000036263 Callithrix jacchus ENSCJAG00000036263 N 0.000
Aan_R014790 Calypte anna Aan_R014790 N 0.000
Aan_R010750 Calypte anna Aan_R010750 I 0.000
MYRFL Cavia porcellus ENSCPOG00000013850 N 0.000
Cmyd_10008461 Chelonia mydas Cmyd_10008461 I 0.000
CABZ01077402.1 Danio rerio ENSDARG00000101645 N 0.000
MYRFL Dasypus novemcinctus ENSDNOG00000044488 N 0.000
MYRFL Felis catus ENSFCAG00000031998 N 0.000
ENSFALG00000010237 Ficedula albicollis ENSFALG00000010237 N 0.000
ENSFALG00000011806 Ficedula albicollis ENSFALG00000011806 I 0.000
ENSGALG00000020522 Gallus gallus ENSGALG00000020522 I 0.000
MYRFL Gallus gallus ENSGALG00000019352 N 0.000
Gfo_R003999 Geospiza fortis Gfo_R003999 N 0.000
Gfo_R011942 Geospiza fortis Gfo_R011942 I 0.000
MYRFL Homo sapiens ENSG00000166268 N 0.000
ENSSTOG00000020113 Ictidomys tridecemlineatus ENSSTOG00000020113 N 0.000
ENSLACG00000016455 Latimeria chalumnae ENSLACG00000016455 I 0.000
MYRFL Loxodonta africana ENSLAFG00000001286 N 0.000
ENSMMUP00000039187 Macaca fascicularis ENSMMUP00000039187 N 0.000
ENSMMUG00000006501 Macaca mulatta ENSMMUG00000006501 I 0.000
MYRF Meleagris gallopavo ENSMGAG00000004733 I 0.000
MYRFL Meleagris gallopavo ENSMGAG00000010606 N 0.000
MYRFL Monodelphis domestica ENSMODG00000020385 N 0.000
ENSMPUG00000017495 Mustela putorius furo ENSMPUG00000017495 N 0.000
Myrfl Mus musculus ENSMUSG00000034057 N 0.000
MYRFL Myotis lucifugus ENSMLUG00000009508 N 0.000
ENSONIG00000015523 Oreochromis niloticus ENSONIG00000015523 I 0.000
MYRFL Ornithorhynchus anatinus ENSOANG00000005958 N 0.000
MYRFL Oryctolagus cuniculus ENSOCUG00000002982 N 0.000
MYRF Oryzias latipes ENSORLG00000006459 I 0.000
MYRFL Otolemur garnettii ENSOGAG00000028145 N 0.000
ENSOARG00000020232 Ovis aries ENSOARG00000020232 I 0.000
ENSPANG00000002677 Papio anubis ENSPANG00000002677 N 0.000
ENSPSIG00000015590 Pelodiscus sinensis ENSPSIG00000015590 I 0.000
ENSPFOG00000011050 Poecilia formosa ENSPFOG00000011050 I 0.000
ENSPFOG00000011745 Poecilia formosa ENSPFOG00000011745 N 0.000
Pvit_15884 Pogona vitticeps Pvit_15884 I 0.000
Myrfl Rattus norvegicus ENSRNOG00000021833 N 0.000
ENSTGUG00000007004 Taeniopygia guttata ENSTGUG00000007004 N 0.000
ENSTGUG00000006600 Taeniopygia guttata ENSTGUG00000006600 I 0.000
MYRFL Takifugu rubripes ENSTRUG00000001490 N 0.000
MYRFL Tetraodon nigroviridis ENSTNIG00000002871 N 0.000
Tal_R006175 Tyto alba Tal_R006175 I 0.000
Tal_R011346 Tyto alba Tal_R011346 N 0.000
myrf Xenopus tropicalis XB-GENE-1020968 I 0.000
ENSXMAG00000003748 Xiphophorus maculatus ENSXMAG00000003748 I 0.000
ENSXMAG00000010424 Xiphophorus maculatus ENSXMAG00000010424 N 0.000