CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bbx
(
Mus musculus
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
ENSMUSG00000022641
T328495_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Bbx
M00196_2.00
Mus musculus
TTCATTGA
TCAATGAA
PBM
Badis et al.(2009)
Bbx_3753
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BBX
M05763_2.00
Homo sapiens
TGAWCDNYGWTCA
TGAWCRNHGWTCA
SELEX
Yin et al.(2017)
BBX_eDBD_HT-SELEX
0.708
0.986
BBX
M05764_2.00
Homo sapiens
TGAACDNYGTTCA
TGAACRNHGTTCA
SELEX
Yin et al.(2017)
BBX_eDBD_Methyl-HT-SELEX
0.708
0.986
bbx
M03975_2.00
Drosophila melanogaster
NAACAATDNCATTGTTN
NAACAATGNHATTGTTN
SELEX
Nitta et al.(2015)
bbx_1
0.486
0.594
Cic
M00195_2.00
Mus musculus
NNTGCTGABN
NVTCAGCANN
PBM
Badis et al.(2009)
Cic_3454
0.434
0.580
For this family, TFs with SR scores >
0.415
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00196_2.00
Sox
17
85
ARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYR
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000086821
Sox
80
148
ARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYR
ENSMUSP00000086826
Sox
80
148
ARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYR
ENSMUSP00000110121
Sox
80
148
ARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYR
ENSMUSP00000110132
Sox
80
148
ARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYR
ENSMUSP00000119238
Sox
80
148
ARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYR
Links
Other
Sox
family TFs
Other
Mus musculus
TFs
240 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy