ENSNLEG00000003524 (Nomascus leucogenys)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSNLEG00000003524 T328524_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BBX
M05763_2.00
Homo sapiens
TGAWCDNYGWTCA

TGAWCRNHGWTCA
SELEX
Yin et al.(2017)
BBX_eDBD_HT-SELEX
0.741 1.000
BBX
M05764_2.00
Homo sapiens
TGAACDNYGTTCA

TGAACRNHGTTCA
SELEX
Yin et al.(2017)
BBX_eDBD_Methyl-HT-SELEX
0.741 1.000
Bbx
M00196_2.00
Mus musculus
TTCATTGA

TCAATGAA
PBM
Badis et al.(2009)
Bbx_3753
0.708 0.986
bbx
M03975_2.00
Drosophila melanogaster
NAACAATDNCATTGTTN

NAACAATGNHATTGTTN
SELEX
Nitta et al.(2015)
bbx_1
0.519 0.609
Cic
M00195_2.00
Mus musculus
NNTGCTGABN

NVTCAGCANN
PBM
Badis et al.(2009)
Cic_3454
0.468 0.594
cic
M06452_2.00
Drosophila melanogaster
YYCATTSA

TSAATGRR
B1H
Zhu et al.(2011)
cic_SANGER_5_FBgn0028386
0.430 0.478
gei-3
M00711_2.00
Caenorhabditis elegans
NWNWMWDN

NHWKWNWN
PBM
Narasimhan et al.(2015)
pTH10038
0.429 0.493
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSNLEP00000004379 Sox 80 148

Links

Other Sox family TFs
Other Nomascus leucogenys TFs

284 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ARR18 Arabidopsis lyrata Al_scaffold_0008_2276 I 0.000
ARR18 Arabidopsis thaliana AT5G58080 D 0.000
Bostr.26833s0442 Boechera stricta Bostr.26833s0442 I 0.000
Bo2g028820 Brassica oleracea Bo2g028820 I 0.000
Bra020390 Brassica rapa Bra020390 I 0.000
Cagra.0891s0003 Capsella grandiflora Cagra.0891s0003 I 0.000
Carubv10026052m.g Capsella rubella Carubv10026052m.g I 0.000
evm.TU.supercontig_46.117 Carica papaya evm.TU.supercontig_46.117 I 0.000
Ca_15151 Cicer arietinum Ca_15151 I 0.000
Cla007104 Citrullus lanatus Cla007104 N 0.000
orange1.1g009670m.g Citrus sinensis orange1.1g009670m.g I 0.000
Eucgr.C00380 Eucalyptus grandis Eucgr.C00380 I 0.000
Thhalv10015296m.g Eutrema salsugineum Thhalv10015296m.g I 0.000
Thhalv10005377m.g Eutrema salsugineum Thhalv10005377m.g N 0.000
GLYMA07G26890 Glycine max GLYMA07G26890 I 0.000
GLYMA09G14650 Glycine max GLYMA09G14650 I 0.000
GLYMA15G24770 Glycine max GLYMA15G24770 I 0.000
GLYMA02G09451 Glycine max GLYMA02G09451 I 0.000
GLYMA05G34516 Glycine max GLYMA05G34516 I 0.000
Gorai.004G291100 Gossypium raimondii Gorai.004G291100 I 0.000
Gorai.009G054200 Gossypium raimondii Gorai.009G054200 I 0.000
Gorai.001G030600 Gossypium raimondii Gorai.001G030600 I 0.000
MLOC_61880 Hordeum vulgare MLOC_61880 I 0.000
chr5.CM0345.260.nd Lotus japonicus chr5.CM0345.260.nd I 0.000
chr6.CM0037.920.nc Lotus japonicus chr6.CM0037.920.nc I 0.000
LjSGA_060038.1 Lotus japonicus LjSGA_060038.1 I 0.000
LjSGA_066155.1 Lotus japonicus LjSGA_066155.1 I 0.000
LjSGA_125152.1 Lotus japonicus LjSGA_125152.1 I 0.000
MDP0000155328 Malus domestica MDP0000155328 I 0.000
MDP0000311914 Malus domestica MDP0000311914 I 0.000
MDP0000124301 Malus domestica MDP0000124301 I 0.000
cassava18405.valid.m1 Manihot esculenta cassava18405.valid.m1 I 0.000
cassava37075.valid.m1 Manihot esculenta cassava37075.valid.m1 I 0.000
cassava37074.valid.m1 Manihot esculenta cassava37074.valid.m1 I 0.000
cassava262.valid.m1 Manihot esculenta cassava262.valid.m1 I 0.000
cassava18404.valid.m1 Manihot esculenta cassava18404.valid.m1 I 0.000
MTR_1g032570 Medicago truncatula MTR_1g032570 I 0.000
POPTR_0018s11960 Populus trichocarpa POPTR_0018s11960 I 0.000
POPTR_0006s20220 Populus trichocarpa POPTR_0006s20220 I 0.000
Pm005877 Prunus mume Pm005877 I 0.000
Pm027701 Prunus mume Pm027701 I 0.000
PRUPE_ppa002493mg Prunus persica PRUPE_ppa002493mg I 0.000
PRUPE_ppa018934mg Prunus persica PRUPE_ppa018934mg I 0.000
29737.m001227 Ricinus communis 29737.m001227 I 0.000
SapurV1A.0100s0230 Salix purpurea SapurV1A.0100s0230 I 0.000
SapurV1A.0347s0250 Salix purpurea SapurV1A.0347s0250 I 0.000
Solyc12g010330.1 Solanum lycopersicum Solyc12g010330.1 I 0.000
PGSC0003DMG400007823 Solanum tuberosum PGSC0003DMG400007823 I 0.000
TCM_037098 Theobroma cacao TCM_037098 I 0.000
TCM_015085 Theobroma cacao TCM_015085 I 0.000