CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSOANG00000011188
(
Ornithorhynchus anatinus
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
ENSOANG00000011188
T328555_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Sox1
M00214_2.00
Mus musculus
NNNNNWBAAW
WTTVWNNNNN
PBM
Badis et al.(2009)
Sox1_2631
0.208
1.000
Sox1
M03542_2.00
Mus musculus
VACAATWNCATTGTT
AACAATGNWATTGTB
SELEX
Jolma et al.(2013)
Sox1_1
0.208
1.000
Sox1
M03543_2.00
Mus musculus
NTGAATWNCATTCAN
NTGAATGNWATTCAN
SELEX
Jolma et al.(2013)
Sox1_2
0.208
1.000
Sox1
M03544_2.00
Mus musculus
TCAATWNCATTGA
TCAATGNWATTGA
SELEX
Jolma et al.(2013)
Sox1_3
0.208
1.000
Sox1
M03545_2.00
Mus musculus
TGAATDDNHATTCA
TGAATDNHHATTCA
SELEX
Jolma et al.(2013)
Sox1_4
0.208
1.000
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOANP00000017723
Sox
1
36
RLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYK
Links
Other
Sox
family TFs
Other
Ornithorhynchus anatinus
TFs
228 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy