tcf7l1 (Oryzias latipes)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSORLG00000011813 T328784_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tcf7l2
M00198_2.00
Mus musculus
NSWTCAAAVN

NBTTTGAWSN
PBM
Badis et al.(2009)
Tcf7l2_3461
0.741 0.971
Tcf7l2
M02646_2.00
Mus musculus
SATCAAAGN

NCTTTGATS
SELEX
Hallikas et al.(2006)
Tcf4
0.741 0.971
TCF7L2
M08167_2.00
Homo sapiens
NVASWTCAAAGVVN

NBBCTTTGAWSTBN
ChIP-seq
Mathelier et al.(2014)
MA0523.1
0.741 0.971
TCF7L2
M09393_2.00
Homo sapiens
DGCAGSTGKS

SMCASCTGCH
Misc
Kulakovskiy et al.(2013)
ITF2_HUMAN.H11MO.0.C
0.741 0.971
TCF7L2
M09394_2.00
Homo sapiens
VVASWTCAAAGVV

BBCTTTGAWSTBB
Misc
Kulakovskiy et al.(2013)
TF7L2_HUMAN.H11MO.0.A
0.741 0.971
Tcf7l2
M09401_2.00
Mus musculus
VVASWTCAAAGVV

BBCTTTGAWSTBB
Misc
Kulakovskiy et al.(2013)
TF7L2_MOUSE.H11MO.0.A
0.741 0.971
TCF7L2
M09638_2.00
Homo sapiens
CCTTTGAWST

ASWTCAAAGG
Misc
Heinz et al.(2010)
K562-TCF7L2_GSE29196
0.741 0.971
TCF7L2
M11316_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF4_Q5_01
0.741 0.971
TCF7L2
M11317_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF4_Q5_02
0.741 0.971
TCF7L2
M11318_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF4_Q5
0.741 0.971
TCF7L2
M11319_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF7L2_06
0.741 0.971
Lef1
M00200_2.00
Mus musculus
NSWTCAAAVN

NBTTTGAWSN
PBM
Badis et al.(2009)
Lef1_3504
0.741 0.957
LEF1
M03511_2.00
Homo sapiens
NRAGATCAAAGRVWW

WWBYCTTTGATCTYN
SELEX
Jolma et al.(2013)
LEF1_1
0.741 0.957
LEF1
M05771_2.00
Homo sapiens
NSATCAAAS

STTTGATSN
SELEX
Yin et al.(2017)
LEF1_eDBD_HT-SELEX_1
0.741 0.957
LEF1
M05772_2.00
Homo sapiens
WCATCGRGRCGCTGW

WCAGCGYCYCGATGW
SELEX
Yin et al.(2017)
LEF1_eDBD_HT-SELEX_2
0.741 0.957
LEF1
M05775_2.00
Homo sapiens
ASATCAAAG

CTTTGATST
SELEX
Yin et al.(2017)
LEF1_FL_HT-SELEX_1
0.741 0.957
LEF1
M05776_2.00
Homo sapiens
ACATCGRGRCGCTGW

WCAGCGYCYCGATGT
SELEX
Yin et al.(2017)
LEF1_FL_HT-SELEX_2
0.741 0.957
LEF1
M05895_2.00
Homo sapiens
WTCAAAGNNN

NNNCTTTGAW
SMiLE-seq
Isakova et al.(2017)
LEF1
0.741 0.957
LEF1
M09392_2.00
Homo sapiens
BSYTTTSWNNTBYH

DRVANNWSAAARSV
Misc
Kulakovskiy et al.(2013)
LEF1_HUMAN.H11MO.0.A
0.741 0.957
Lef1
M09402_2.00
Mus musculus
BSYTTTSWNNTBYH

DRVANNWSAAARSV
Misc
Kulakovskiy et al.(2013)
LEF1_MOUSE.H11MO.0.B
0.741 0.957
LEF1
M11311_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q2_01
0.741 0.957
LEF1
M11312_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q3
0.741 0.957
LEF1
M11313_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q4
0.741 0.957
LEF1
M11314_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q5_01
0.741 0.957
LEF1
M11315_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q5
0.741 0.957
LEF1
M05773_2.00
Homo sapiens
ASATCAAAG

CTTTGATST
SELEX
Yin et al.(2017)
LEF1_eDBD_Methyl-HT-SELEX_1
0.741 0.957
LEF1
M05774_2.00
Homo sapiens
WCATCGRGGCGCTGW

WCAGCGCCYCGATGW
SELEX
Yin et al.(2017)
LEF1_eDBD_Methyl-HT-SELEX_2
0.741 0.957
LEF1
M05777_2.00
Homo sapiens
ASATCAAAG

CTTTGATST
SELEX
Yin et al.(2017)
LEF1_FL_Methyl-HT-SELEX_1
0.741 0.957
LEF1
M05778_2.00
Homo sapiens
ACATCGRGRCGCTGW

WCAGCGYCYCGATGT
SELEX
Yin et al.(2017)
LEF1_FL_Methyl-HT-SELEX_2
0.741 0.957
TCF7L1
M03512_2.00
Homo sapiens
AAAGATCAAAGG

CCTTTGATCTTT
SELEX
Jolma et al.(2013)
TCF7L1_1
0.741 0.942
TCF7L1
M05779_2.00
Homo sapiens
RSATCAAAG

CTTTGATSY
SELEX
Yin et al.(2017)
TCF7L1_eDBD_HT-SELEX_1
0.741 0.942
TCF7L1
M05780_2.00
Homo sapiens
ACATCGRGRCGCTGW

WCAGCGYCYCGATGT
SELEX
Yin et al.(2017)
TCF7L1_eDBD_HT-SELEX_2
0.741 0.942
TCF7L1
M09395_2.00
Homo sapiens
NBBCTTTGAWSTB

VASWTCAAAGVVN
Misc
Kulakovskiy et al.(2013)
TF7L1_HUMAN.H11MO.0.B
0.741 0.942
TCF7L1
M11320_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF3_01
0.741 0.942
TCF7L1
M11321_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF3_Q6_01
0.741 0.942
TCF7L1
M11322_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF3_Q6
0.741 0.942
TCF7L1
M05781_2.00
Homo sapiens
CTTTGATSY

RSATCAAAG
SELEX
Yin et al.(2017)
TCF7L1_eDBD_Methyl-HT-SELEX_1
0.741 0.942
TCF7L1
M05782_2.00
Homo sapiens
ACATCGRGRCGCTGW

WCAGCGYCYCGATGT
SELEX
Yin et al.(2017)
TCF7L1_eDBD_Methyl-HT-SELEX_2
0.741 0.942
Tcf7l1
M00207_2.00
Mus musculus
NNNNWWDN

NHWWNNNN
PBM
Badis et al.(2009)
Tcf3_3787
0.741 0.928
Tcf7l1
M09406_2.00
Mus musculus
BBCTTTGAWST

ASWTCAAAGVV
Misc
Kulakovskiy et al.(2013)
TF7L1_MOUSE.H11MO.0.A
0.741 0.928
Tcf7l1
M09407_2.00
Mus musculus
NDGCAGSTGBB

VVCASCTGCHN
Misc
Kulakovskiy et al.(2013)
TFE2_MOUSE.H11MO.0.A
0.741 0.928
pan
M06451_2.00
Drosophila melanogaster
DWYCAAAD

HTTTGRWH
B1H
Zhu et al.(2011)
pan_FlyReg_FBgn0085432
0.720 0.913
pan
M08428_2.00
Drosophila melanogaster
WHNAAAVRNRSCGM

KCGSYNYBTTTNDW
ChIP-chip
Mathelier et al.(2014)
MA0237.2
0.720 0.913
pan
M11337_2.00
Drosophila melanogaster
AAGATCAAAGG

CCTTTGATCTT
Transfac
Matys et al.(2006)
I$TCF_1
0.720 0.913
pan
M11338_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$TCF_Q6
0.720 0.913
Tcf7
M00193_2.00
Mus musculus
HNHNNNNNN

NNNNNNDND
PBM
Badis et al.(2009)
Tcf7_0950
0.716 0.957
Tcf7
M03532_2.00
Mus musculus
AAASATCAAAGV

BCTTTGATSTTT
SELEX
Jolma et al.(2013)
Tcf7_1
0.716 0.957
TCF7
M05755_2.00
Homo sapiens
DSATCAAWS

SWTTGATSH
SELEX
Yin et al.(2017)
TCF7_eDBD_HT-SELEX_1
0.716 0.957
TCF7
M05756_2.00
Homo sapiens
WCWKCGYCYCGWTGW

WCAWCGRGRCGMWGW
SELEX
Yin et al.(2017)
TCF7_eDBD_HT-SELEX_2
0.716 0.957
TCF7
M05890_2.00
Homo sapiens
NNASATCAAASNN

NNSTTTGATSTNN
SMiLE-seq
Isakova et al.(2017)
TCF7
0.716 0.957
TCF7
M09386_2.00
Homo sapiens
NBBCTTTSAWSTBNBN

NVNVASWTSAAAGVVN
Misc
Kulakovskiy et al.(2013)
TCF7_HUMAN.H11MO.0.A
0.716 0.957
Tcf7
M09400_2.00
Mus musculus
VVRVADSAAARVVVNV

BNBBBYTTTSHTBYBB
Misc
Kulakovskiy et al.(2013)
TCF7_MOUSE.H11MO.0.A
0.716 0.957
TCF7
M11294_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF1_Q5_01
0.716 0.957
TCF7
M11295_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF1_Q5
0.716 0.957
TCF7
M05757_2.00
Homo sapiens
RSATCAAAS

STTTGATSY
SELEX
Yin et al.(2017)
TCF7_eDBD_Methyl-HT-SELEX_1
0.716 0.957
TCF7
M05758_2.00
Homo sapiens
WCAWCGRGRCGMWGW

WCWKCGYCYCGWTGW
SELEX
Yin et al.(2017)
TCF7_eDBD_Methyl-HT-SELEX_2
0.716 0.957
pop-1
M00712_2.00
Caenorhabditis elegans
NNHDWVNNNN

NNNNBWHDNN
PBM
Narasimhan et al.(2015)
pTH9135
0.515 0.551
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000014809 Sox 330 398
ENSORLP00000014812 Sox 331 399
ENSORLP00000014814 Sox 298 366

Links

Other Sox family TFs
Other Oryzias latipes TFs

513 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
WER Arabidopsis thaliana AT5G14750 D 0.000
MYB23 Arabidopsis thaliana AT5G40330 D 0.000
LjT16O05.150.nd Lotus japonicus LjT16O05.150.nd I 0.000
Ciclev10017556m.g Citrus clementina Ciclev10017556m.g I 0.000
Ciclev10032713m.g Citrus clementina Ciclev10032713m.g I 0.000
Eucgr.A02110 Eucalyptus grandis Eucgr.A02110 I 0.000
Eucgr.B00373 Eucalyptus grandis Eucgr.B00373 I 0.000
Eucgr.J02212 Eucalyptus grandis Eucgr.J02212 I 0.000
evm.TU.supercontig_124.57 Carica papaya evm.TU.supercontig_124.57 I 0.000
Carubv10018791m.g Capsella rubella Carubv10018791m.g I 0.000
Carubv10005698m.g Capsella rubella Carubv10005698m.g I 0.000
Carubv10001990m.g Capsella rubella Carubv10001990m.g I 0.000
Cagra.4961s0006 Capsella grandiflora Cagra.4961s0006 I 0.000
Cagra.3166s0078 Capsella grandiflora Cagra.3166s0078 I 0.000
Cagra.3160s0003 Capsella grandiflora Cagra.3160s0003 I 0.000
Bostr.7200s0005 Boechera stricta Bostr.7200s0005 I 0.000
Bostr.2902s0211 Boechera stricta Bostr.2902s0211 I 0.000
gene12738-v1.0-hybrid Fragaria vesca gene12738-v1.0-hybrid I 0.000
Gorai.007G001800 Gossypium raimondii Gorai.007G001800 I 0.000
Gorai.010G087200 Gossypium raimondii Gorai.010G087200 I 0.000
Thhalv10028340m.g Eutrema salsugineum Thhalv10028340m.g I 0.000
Thhalv10014715m.g Eutrema salsugineum Thhalv10014715m.g I 0.000
Thhalv10005428m.g Eutrema salsugineum Thhalv10005428m.g I 0.000
SapurV1A.1404s0020 Salix purpurea SapurV1A.1404s0020 I 0.000
SapurV1A.1178s0050 Salix purpurea SapurV1A.1178s0050 I 0.000
orange1.1g047269m.g Citrus sinensis orange1.1g047269m.g I 0.000
MDP0000887107 Malus domestica MDP0000887107 I 0.000
MDP0000650225 Malus domestica MDP0000650225 I 0.000
MDP0000578193 Malus domestica MDP0000578193 I 0.000
MDP0000537324 Malus domestica MDP0000537324 I 0.000
MDP0000199965 Malus domestica MDP0000199965 I 0.000
MDP0000164048 Malus domestica MDP0000164048 I 0.000
MDP0000140609 Malus domestica MDP0000140609 I 0.000
Gorai.012G061800 Gossypium raimondii Gorai.012G061800 I 0.000
Bostr.0556s0467 Boechera stricta Bostr.0556s0467 I 0.000
Aquca_025_00333 Aquilegia coerulea Aquca_025_00333 I 0.000
PRUPE_ppa017136mg Prunus persica PRUPE_ppa017136mg I 0.000
PRUPE_ppa015883mg Prunus persica PRUPE_ppa015883mg I 0.000
PRUPE_ppa010908mg Prunus persica PRUPE_ppa010908mg I 0.000
POPTR_0015s08680 Populus trichocarpa POPTR_0015s08680 I 0.000
POPTR_0012s08190 Populus trichocarpa POPTR_0012s08190 I 0.000
GLYMA17G05831 Glycine max GLYMA17G05831 I 0.000
GLYMA13G16890 Glycine max GLYMA13G16890 I 0.000
WER Arabidopsis lyrata fgenesh2_kg.6__1454__AT5G14750.1 I 0.000
GL1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5000559 I 0.000
Bra025589 Brassica rapa Bra025589 I 0.000
Bra025311 Brassica rapa Bra025311 I 0.000
Bra008740 Brassica rapa Bra008740 I 0.000
Bo9g165670 Brassica oleracea Bo9g165670 I 0.000
Bo2g012170 Brassica oleracea Bo2g012170 I 0.000
GL1 Arabidopsis thaliana AT3G27920 I 0.000
TCM_010360 Theobroma cacao TCM_010360 I 0.000
TCM_012057 Theobroma cacao TCM_012057 I 0.000
TCM_016886 Theobroma cacao TCM_016886 I 0.000
Aquca_002_00170 Aquilegia coerulea Aquca_002_00170 I 0.000
cassava9944.m1 Manihot esculenta cassava9944.m1 I 0.000
cassava27350.m1 Manihot esculenta cassava27350.m1 I 0.000
cassava26193.m1 Manihot esculenta cassava26193.m1 I 0.000
Pm027048 Prunus mume Pm027048 I 0.000
Pm024725 Prunus mume Pm024725 I 0.000
Pm006678 Prunus mume Pm006678 I 0.000
Pm005573 Prunus mume Pm005573 I 0.000
VIT_17s0000g08480 Vitis vinifera VIT_17s0000g08480 I 0.000
VIT_14s0066g01220 Vitis vinifera VIT_14s0066g01220 I 0.000
VIT_11s0016g01300 Vitis vinifera VIT_11s0016g01300 I 0.000
VIT_01s0127g00730 Vitis vinifera VIT_01s0127g00730 I 0.000
AMTR_s00068p00099460 Amborella trichopoda AMTR_s00068p00099460 I 0.000
Eucgr.B03324 Eucalyptus grandis Eucgr.B03324 N 0.000
Eucgr.E00407 Eucalyptus grandis Eucgr.E00407 N 0.000
VIT_00s0341g00050 Vitis vinifera VIT_00s0341g00050 N 0.000