HMG20B (Pan troglodytes)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSPTRG00000010268 T328986_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Hmg20b
M02487_2.00
Mus musculus
NNATTATWHWN

NWDWATAATNN
PBM
Weirauch et al.(2014)
pTH8555
0.478 0.914
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000049115 Sox 80 137

Links

Other Sox family TFs
Other Pan troglodytes TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
HMG20A Callithrix jacchus ENSCJAG00000011131 I 0.625
ENSOARG00000012318 Ovis aries ENSOARG00000012318 I 0.505
HMG20B Otolemur garnettii ENSOGAG00000014171 I 0.505
ENSMPUG00000003925 Mustela putorius furo ENSMPUG00000003925 I 0.505
HMG20B Myotis lucifugus ENSMLUG00000022392 I 0.505
HMG20B Loxodonta africana ENSLAFG00000007845 I 0.505
ENSAMEG00000005678 Ailuropoda melanoleuca ENSAMEG00000005678 I 0.505
HMG20B Gorilla gorilla ENSGGOG00000014805 I 0.505
HMG20B Tursiops truncatus ENSTTRG00000008832 I 0.505
ENSSTOG00000022314 Ictidomys tridecemlineatus ENSSTOG00000022314 I 0.505
ENSPPYG00000009378 Pongo abelii ENSPPYG00000009378 I 0.505
HMG20B Procavia capensis ENSPCAG00000010772 I 0.505
Myotis_brandtii_HMG20B_10016321 Myotis brandtii Myotis_brandtii_HMG20B_10016321 I 0.505
ENSPANG00000010575 Papio anubis ENSPANG00000010575 I 0.505
HMG20B Canis familiaris ENSCAFG00000019215 I 0.505
ENSBTAG00000047668 Bos taurus ENSBTAG00000047668 I 0.505
HMG20B Homo sapiens ENSG00000064961 I 0.505
HMG20B Felis catus ENSFCAG00000026167 I 0.505
HMG20B Cavia porcellus ENSCPOG00000010777 I 0.505
ENSCSAG00000011140 Chlorocebus sabaeus ENSCSAG00000011140 I 0.505
Gfo_R007604 Geospiza fortis Gfo_R007604 I 0.501
ENSPSIG00000010923 Pelodiscus sinensis ENSPSIG00000010923 I 0.501
ENSSHAG00000007226 Sarcophilus harrisii ENSSHAG00000007226 I 0.501
HMG20B Taeniopygia guttata ENSTGUG00000000169 I 0.501
Afo_R007636 Aptenodytes forsteri Afo_R007636 I 0.501
ENSAPLG00000005528 Anas platyrhynchos ENSAPLG00000005528 I 0.501
Alligator_sinensis_CCG000441.1 Alligator sinensis Alligator_sinensis_CCG000441.1 I 0.501
Cmyd_10002377 Chelonia mydas Cmyd_10002377 I 0.501
Aan_R011684 Calypte anna Aan_R011684 I 0.501
Pvit_08123 Pogona vitticeps Pvit_08123 I 0.501
ENSMEUG00000001270 Macropus eugenii ENSMEUG00000001270 I 0.501
HMG20B Meleagris gallopavo ENSMGAG00000001362 I 0.501
ENSFALG00000011609 Ficedula albicollis ENSFALG00000011609 I 0.501
HMG20B Monodelphis domestica ENSMODG00000006884 I 0.501
HMG20B Ornithorhynchus anatinus ENSOANG00000013515 I 0.501
HMG20B Gallus gallus ENSGALG00000027838 I 0.501
ENSDORG00000012598 Dipodomys ordii ENSDORG00000012598 I 0.498
HMG20B Callithrix jacchus ENSCJAG00000003488 I 0.497
hmg20b.L Xenopus laevis XB-GENE-5809135 I 0.494
hmg20b Xenopus tropicalis XB-GENE-5809048 I 0.494
hmg20b.S Xenopus laevis XB-GENE-17338323 I 0.494
ENSAMXG00000017986 Astyanax mexicanus ENSAMXG00000017986 I 0.486
hmg20b Danio rerio ENSDARG00000042045 I 0.486
HMG20A Pteropus vampyrus ENSPVAG00000003321 N 0.480
HMG20B Pteropus vampyrus ENSPVAG00000004300 I 0.480
Hmg20b Rattus norvegicus ENSRNOG00000020601 I 0.478
Hmg20b Mus musculus ENSMUSG00000020232 D 0.478
Thaps1871 Thalassiosira pseudonana Thaps1871 N 0.471
HMG20A Homo sapiens ENSG00000140382 I 0.447
Thaps1764 Thalassiosira pseudonana Thaps1764 N 0.441
Cmyd_10009674 Chelonia mydas Cmyd_10009674 I 0.437
Thaps10374 Thalassiosira pseudonana Thaps10374 N 0.432
LCUP018488 Lucilia cuprina LCUP018488 N 0.427
D917_08464 Trichinella nativa D917_08464 N 0.424
D917_01243 Trichinella nativa D917_01243 N 0.424
ENSONIG00000004838 Oreochromis niloticus ENSONIG00000004838 I 0.418
hmg20b Gasterosteus aculeatus ENSGACG00000012785 I 0.418
hmg20b Oryzias latipes ENSORLG00000004640 I 0.418
eef2l2 Takifugu rubripes ENSTRUG00000017921 I 0.418
hmg20b Tetraodon nigroviridis ENSTNIG00000010630 I 0.418
ENSPFOG00000003017 Poecilia formosa ENSPFOG00000003017 I 0.418
ENSXMAG00000012647 Xiphophorus maculatus ENSXMAG00000012647 I 0.418