CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AABR07019870.1
(
Rattus norvegicus
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
ENSRNOG00000038033
T329057_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000054682
Sox
8
81
PKKPRDKMSSYAFFVQTCQEEHKKKHPYASVNFSEFSKKCSERCKTVSFKEKGRFEDMAKDDKARYEREMKTYI
ENSRNOP00000054682
Sox
98
160
SKRPPSAFFLFCSEYRPKIKGEHPGLSIGDAAKKLGEMGNNTAPVDKQLYEKKATELKEKYEK
Links
Other
Sox
family TFs
Other
Rattus norvegicus
TFs
194 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Myotis_brandtii_Hmgb1_10003213
Myotis brandtii
Myotis_brandtii_Hmgb1_10003213
N
0.676
Myotis_brandtii_Hmgb1_10026956
Myotis brandtii
Myotis_brandtii_Hmgb1_10026956
N
0.644
ENSMMUG00000001275
Macaca mulatta
ENSMMUG00000001275
N
0.624
HMGB1
Microcebus murinus
ENSMICG00000006213
N
0.624
ENSPANG00000005029
Papio anubis
ENSPANG00000005029
N
0.624
ENSECAG00000005186
Equus caballus
ENSECAG00000005186
N
0.624
ENSPANG00000011105
Papio anubis
ENSPANG00000011105
N
0.624
ENSCPOG00000003985
Cavia porcellus
ENSCPOG00000003985
N
0.624
Hmg1l1
Rattus norvegicus
ENSRNOG00000051482
N
0.624
Hmg1l1
Rattus norvegicus
ENSRNOG00000034130
N
0.624
ENSSTOG00000000443
Ictidomys tridecemlineatus
ENSSTOG00000000443
N
0.624
ENSMODG00000009238
Monodelphis domestica
ENSMODG00000009238
N
0.624
AC135696.1
Rattus norvegicus
ENSRNOG00000058908
N
0.624
ENSOARG00000017078
Ovis aries
ENSOARG00000017078
N
0.624
ENSCJAG00000008378
Callithrix jacchus
ENSCJAG00000008378
N
0.620
ENSCJAG00000008384
Callithrix jacchus
ENSCJAG00000008384
N
0.618
ENSPPYG00000011668
Pongo abelii
ENSPPYG00000011668
N
0.615
HMGB1
Bos taurus
ENSBTAG00000014862
N
0.611
ENSECAG00000003655
Equus caballus
ENSECAG00000003655
N
0.605
LOC108350839
Rattus norvegicus
ENSRNOG00000038437
N
0.600
ENSOGAG00000028411
Otolemur garnettii
ENSOGAG00000028411
N
0.598
ENSOGAG00000032240
Otolemur garnettii
ENSOGAG00000032240
N
0.596
ENSOGAG00000032152
Otolemur garnettii
ENSOGAG00000032152
N
0.595
ENSTBEG00000005874
Tupaia belangeri
ENSTBEG00000005874
N
0.594
ENSOARG00000011611
Ovis aries
ENSOARG00000011611
N
0.593
ENSCJAG00000022832
Callithrix jacchus
ENSCJAG00000022832
N
0.590
ENSTBEG00000016187
Tupaia belangeri
ENSTBEG00000016187
N
0.588
ENSOCUG00000004133
Oryctolagus cuniculus
ENSOCUG00000004133
N
0.587
ENSDNOG00000005537
Dasypus novemcinctus
ENSDNOG00000005537
N
0.586
ENSTBEG00000015340
Tupaia belangeri
ENSTBEG00000015340
N
0.580
LOC100911637
Rattus norvegicus
ENSRNOG00000048094
N
0.579
LOC100911637
Rattus norvegicus
ENSRNOG00000048471
N
0.579
ENSOGAG00000027410
Otolemur garnettii
ENSOGAG00000027410
N
0.574
ENSDNOG00000046844
Dasypus novemcinctus
ENSDNOG00000046844
N
0.573
ENSMEUG00000011289
Macropus eugenii
ENSMEUG00000011289
N
0.571
Myotis_brandtii_Hmgb2_10018437
Myotis brandtii
Myotis_brandtii_Hmgb2_10018437
N
0.568
Hmgb1-ps3
Rattus norvegicus
ENSRNOG00000032420
N
0.566
ENSOGAG00000010941
Otolemur garnettii
ENSOGAG00000010941
N
0.565
AAC59859
Xenopus laevis
AAC59859
N
0.563
ENSMICG00000016224
Microcebus murinus
ENSMICG00000016224
N
0.563
AAH73449
Xenopus laevis
AAH73449
N
0.563
ENSPANG00000007527
Papio anubis
ENSPANG00000007527
N
0.563
ENSOARG00000015955
Ovis aries
ENSOARG00000015955
N
0.563
ENSOARG00000015382
Ovis aries
ENSOARG00000015382
N
0.563
ENSOARG00000010383
Ovis aries
ENSOARG00000010383
N
0.563
ENSONIG00000005505
Oreochromis niloticus
ENSONIG00000005505
N
0.558
ENSOGAG00000030052
Otolemur garnettii
ENSOGAG00000030052
N
0.557
Hmgb2
Rattus norvegicus
ENSRNOG00000033321
N
0.557
Hmgb2l1
Rattus norvegicus
ENSRNOG00000013167
N
0.557
ENSOGAG00000029748
Otolemur garnettii
ENSOGAG00000029748
N
0.554
RGD1561694
Rattus norvegicus
ENSRNOG00000029107
N
0.554
ENSTSYG00000012587
Tarsius syrichta
ENSTSYG00000012587
N
0.553
ENSXMAG00000006844
Xiphophorus maculatus
ENSXMAG00000006844
N
0.553
ENSMMUP00000039817
Macaca fascicularis
ENSMMUP00000039817
N
0.553
ENSOGAG00000032325
Otolemur garnettii
ENSOGAG00000032325
N
0.552
AABR07025074.1
Rattus norvegicus
ENSRNOG00000032550
N
0.551
ENSGGOG00000007804
Gorilla gorilla
ENSGGOG00000007804
N
0.551
ENSOCUG00000021132
Oryctolagus cuniculus
ENSOCUG00000021132
N
0.549
ENSOCUG00000023449
Oryctolagus cuniculus
ENSOCUG00000023449
N
0.549
hmgb2.S
Xenopus laevis
XB-GENE-1000251
N
0.549
ENSTBEG00000009427
Tupaia belangeri
ENSTBEG00000009427
N
0.548
ENSDNOG00000047452
Dasypus novemcinctus
ENSDNOG00000047452
N
0.547
ENSBTAP00000049357-D1
Bos grunniens
ENSBTAP00000049357-D1
N
0.546
hmgb1b
Takifugu rubripes
ENSTRUG00000004822
N
0.545
ENSTSYG00000003868
Tarsius syrichta
ENSTSYG00000003868
N
0.544
ENSOGAG00000028007
Otolemur garnettii
ENSOGAG00000028007
N
0.543
ENSGMOG00000010657
Gadus morhua
ENSGMOG00000010657
N
0.540
ENSTBEG00000014925
Tupaia belangeri
ENSTBEG00000014925
N
0.539
ENSTBEG00000013375
Tupaia belangeri
ENSTBEG00000013375
N
0.536
ENSPFOG00000004533
Poecilia formosa
ENSPFOG00000004533
N
0.536
ENSOGAG00000032147
Otolemur garnettii
ENSOGAG00000032147
N
0.536
ENSTBEG00000012989
Tupaia belangeri
ENSTBEG00000012989
N
0.535
HMGB1
Monodelphis domestica
ENSMODG00000004443
N
0.535
ENSOARG00000019147
Ovis aries
ENSOARG00000019147
N
0.534
BAA06440
Xenopus laevis
BAA06440
N
0.533
ENSMEUG00000016024
Macropus eugenii
ENSMEUG00000016024
N
0.533
ENSPFOG00000008464
Poecilia formosa
ENSPFOG00000008464
N
0.531
ENSFCAG00000028961
Felis catus
ENSFCAG00000028961
N
0.531
hmgb2a
Danio rerio
ENSDARG00000029722
N
0.530
ENSCSAG00000015385
Chlorocebus sabaeus
ENSCSAG00000015385
N
0.529
HMGB2
Sus scrofa
ENSSSCG00000009704
N
0.529
ENSAMXG00000014832
Astyanax mexicanus
ENSAMXG00000014832
N
0.526
HMGB2
Macaca mulatta
ENSMMUG00000020008
N
0.524
ENSMLUG00000028530
Myotis lucifugus
ENSMLUG00000028530
N
0.523
ENSSTOG00000007009
Ictidomys tridecemlineatus
ENSSTOG00000007009
N
0.523
ENSGGOG00000025109
Gorilla gorilla
ENSGGOG00000025109
N
0.521
ENSTBEG00000017117
Tupaia belangeri
ENSTBEG00000017117
N
0.520
ENSMODG00000004606
Monodelphis domestica
ENSMODG00000004606
N
0.520
ENSCAFG00000023930
Canis familiaris
ENSCAFG00000023930
N
0.519
ENSOGAG00000034801
Otolemur garnettii
ENSOGAG00000034801
N
0.519
hmgb1a
Danio rerio
ENSDARG00000099175
N
0.518
ENSOCUG00000027747
Oryctolagus cuniculus
ENSOCUG00000027747
N
0.518
ENSMMUG00000002662
Macaca mulatta
ENSMMUG00000002662
N
0.515
ENSCJAG00000007095
Callithrix jacchus
ENSCJAG00000007095
N
0.513
ENSCJAG00000017053
Callithrix jacchus
ENSCJAG00000017053
N
0.513
RGD1563668
Rattus norvegicus
ENSRNOG00000038478
N
0.513
ENSCJAG00000014214
Callithrix jacchus
ENSCJAG00000014214
N
0.512
hmgb1a
Takifugu rubripes
ENSTRUG00000008452
N
0.512
ENSOGAG00000030563
Otolemur garnettii
ENSOGAG00000030563
N
0.510
hmgb1b
Gasterosteus aculeatus
ENSGACG00000011447
N
0.508
LOC688583
Rattus norvegicus
ENSRNOG00000050910
N
0.507
ENSSSCG00000020770
Sus scrofa
ENSSSCG00000020770
N
0.507
ENSSSCG00000024283
Sus scrofa
ENSSSCG00000024283
N
0.507
ENSMPUG00000018359
Mustela putorius furo
ENSMPUG00000018359
N
0.507
ENSCJAG00000033322
Callithrix jacchus
ENSCJAG00000033322
N
0.507
ENSCSAG00000013078
Chlorocebus sabaeus
ENSCSAG00000013078
N
0.507
HMGB3
Oryctolagus cuniculus
ENSOCUG00000024959
N
0.503
ENSLAFG00000030388
Loxodonta africana
ENSLAFG00000030388
N
0.502
ENSGGOG00000025769
Gorilla gorilla
ENSGGOG00000025769
N
0.501
hmgb1a
Tetraodon nigroviridis
ENSTNIG00000009909
N
0.501
ENSBTAG00000031711
Bos taurus
ENSBTAG00000031711
N
0.501
ENSOGAG00000033437
Otolemur garnettii
ENSOGAG00000033437
N
0.500
ENSMPUG00000020113
Mustela putorius furo
ENSMPUG00000020113
N
0.493
ENSCJAG00000010744
Callithrix jacchus
ENSCJAG00000010744
N
0.492
ENSOGAG00000027183
Otolemur garnettii
ENSOGAG00000027183
N
0.492
ENSDNOG00000042649
Dasypus novemcinctus
ENSDNOG00000042649
N
0.491
ENSDNOG00000041663
Dasypus novemcinctus
ENSDNOG00000041663
N
0.491
ENSCJAG00000007419
Callithrix jacchus
ENSCJAG00000007419
N
0.489
ENSSTOG00000012404
Ictidomys tridecemlineatus
ENSSTOG00000012404
N
0.489
ENSONIG00000019935
Oreochromis niloticus
ENSONIG00000019935
N
0.489
ENSGGOG00000023265
Gorilla gorilla
ENSGGOG00000023265
N
0.488
ENSMEUG00000009480
Macropus eugenii
ENSMEUG00000009480
N
0.488
ENSMMUG00000019832
Macaca mulatta
ENSMMUG00000019832
N
0.488
ENSPANG00000010595
Papio anubis
ENSPANG00000010595
N
0.488
ENSMPUG00000000121
Mustela putorius furo
ENSMPUG00000000121
N
0.487
ENSGMOG00000010060
Gadus morhua
ENSGMOG00000010060
N
0.485
hmgb2b
Gasterosteus aculeatus
ENSGACG00000001173
N
0.484
ENSOGAG00000033550
Otolemur garnettii
ENSOGAG00000033550
N
0.484
ENSCJAG00000014197
Callithrix jacchus
ENSCJAG00000014197
N
0.484
ENSOARG00000005357
Ovis aries
ENSOARG00000005357
N
0.483
ENSCJAG00000011146
Callithrix jacchus
ENSCJAG00000011146
N
0.482
ENSBTAG00000020685
Bos taurus
ENSBTAG00000020685
N
0.480
hmgb1a
Oryzias latipes
ENSORLG00000003400
N
0.479
ENSXMAG00000011106
Xiphophorus maculatus
ENSXMAG00000011106
N
0.478
ENSPFOG00000004794
Poecilia formosa
ENSPFOG00000004794
N
0.478
ENSOCUG00000016030
Oryctolagus cuniculus
ENSOCUG00000016030
N
0.478
ENSETEG00000013458
Echinops telfairi
ENSETEG00000013458
N
0.476
hmgb2b
Oryzias latipes
ENSORLG00000018687
N
0.475
hmgb2b
Tetraodon nigroviridis
ENSTNIG00000004824
N
0.475
ENSOGAG00000029272
Otolemur garnettii
ENSOGAG00000029272
N
0.475
hmgb2b
Takifugu rubripes
ENSTRUG00000005015
N
0.475
Myotis_brandtii_HMGB3_10026974
Myotis brandtii
Myotis_brandtii_HMGB3_10026974
N
0.471
ENSTBEG00000015758
Tupaia belangeri
ENSTBEG00000015758
N
0.470
AAI68534
Xenopus tropicalis
AAI68534
N
0.469
ENSCJAG00000014991
Callithrix jacchus
ENSCJAG00000014991
N
0.465
ENSOGAG00000033253
Otolemur garnettii
ENSOGAG00000033253
N
0.465
ENSAMEG00000011652
Ailuropoda melanoleuca
ENSAMEG00000011652
N
0.465
ENSOGAG00000031959
Otolemur garnettii
ENSOGAG00000031959
N
0.462
ENSGGOG00000023427
Gorilla gorilla
ENSGGOG00000023427
N
0.460
AABR07060165.1
Rattus norvegicus
ENSRNOG00000048544
N
0.458
ENSOGAG00000024497
Otolemur garnettii
ENSOGAG00000024497
N
0.457
ENSETEG00000009246
Echinops telfairi
ENSETEG00000009246
N
0.455
ENSCHOG00000001924
Choloepus hoffmanni
ENSCHOG00000001924
N
0.455
ENSPANG00000025478
Papio anubis
ENSPANG00000025478
N
0.454
ENSCJAG00000007594
Callithrix jacchus
ENSCJAG00000007594
N
0.453
ENSCSAG00000010707
Chlorocebus sabaeus
ENSCSAG00000010707
N
0.452
ENSAMXG00000014031
Astyanax mexicanus
ENSAMXG00000014031
N
0.451
ENSPANG00000023341
Papio anubis
ENSPANG00000023341
N
0.450
ENSMICG00000010120
Microcebus murinus
ENSMICG00000010120
N
0.450
ENSBTAP00000049357-D3
Bos grunniens
ENSBTAP00000049357-D3
N
0.450
ENSPPYG00000020229
Pongo abelii
ENSPPYG00000020229
N
0.447
ENSBTAG00000005098
Bos taurus
ENSBTAG00000005098
N
0.447
ENSBTAP00000049034-D1
Bos grunniens
ENSBTAP00000049034-D1
N
0.447
ENSPMAG00000007397
Petromyzon marinus
ENSPMAG00000007397
N
0.445
ENSCJAG00000004401
Callithrix jacchus
ENSCJAG00000004401
N
0.444
AAH44009
Xenopus laevis
AAH44009
N
0.443
DILT_0001497901
Diphyllobothrium latum
DILT_0001497901
N
0.441
SMAR013695
Strigamia maritima
SMAR013695
N
0.441
Alligator_sinensis_CCG007907.1
Alligator sinensis
Alligator_sinensis_CCG007907.1
N
0.441
ENSBTAP00000052990-D1
Bos grunniens
ENSBTAP00000052990-D1
N
0.440
ENSMICG00000000573
Microcebus murinus
ENSMICG00000000573
N
0.440
ENSBTAG00000015315
Bos taurus
ENSBTAG00000015315
N
0.440
ENSCJAG00000005187
Callithrix jacchus
ENSCJAG00000005187
I
0.439
hmgb3b
Danio rerio
ENSDARG00000006408
N
0.439
SSLN_0000493501
Schistocephalus solidus
SSLN_0000493501
N
0.436
ENSGGOG00000026945
Gorilla gorilla
ENSGGOG00000026945
N
0.435
ENSCJAG00000003900
Callithrix jacchus
ENSCJAG00000003900
N
0.435
ENSMMUG00000010106
Macaca mulatta
ENSMMUG00000010106
I
0.434
ENSAMXG00000014052
Astyanax mexicanus
ENSAMXG00000014052
N
0.433
ECANG7_02036
Echinococcus canadensis
ECANG7_02036
N
0.430
TTAC_0000225801
Hydatigera taeniaeformis
TTAC_0000225801
N
0.430
HMGB1
Gorilla gorilla
ENSGGOG00000026606
N
0.429
ENSTBEG00000005706
Tupaia belangeri
ENSTBEG00000005706
N
0.429
ENSDORG00000004753
Dipodomys ordii
ENSDORG00000004753
N
0.427
ENSCSAG00000001500
Chlorocebus sabaeus
ENSCSAG00000001500
N
0.424
ENSCJAG00000033913
Callithrix jacchus
ENSCJAG00000033913
N
0.423
ENSPANG00000020000
Papio anubis
ENSPANG00000020000
N
0.420
CapteG158220
Capitella teleta
CapteG158220
N
0.420
ENSGGOG00000027139
Gorilla gorilla
ENSGGOG00000027139
N
0.420
Sakowv30042012m.g
Saccoglossus kowalevskii
Sakowv30042012m.g
N
0.419
ENSOGAG00000028737
Otolemur garnettii
ENSOGAG00000028737
N
0.418
ENSOGAG00000006589
Otolemur garnettii
ENSOGAG00000006589
N
0.418
ENSMMUG00000007761
Macaca mulatta
ENSMMUG00000007761
N
0.416
ENSMMUP00000010196
Macaca fascicularis
ENSMMUP00000010196
N
0.416