LOC108350839 (Rattus norvegicus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSRNOG00000038437 T329058_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000044879 Sox 6 79
ENSRNOP00000044879 Sox 95 163

Links

Other Sox family TFs
Other Rattus norvegicus TFs

235 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AC135696.1 Rattus norvegicus ENSRNOG00000058908 N 0.717
ENSSTOG00000000443 Ictidomys tridecemlineatus ENSSTOG00000000443 N 0.717
ENSMODG00000009238 Monodelphis domestica ENSMODG00000009238 N 0.717
ENSCPOG00000003985 Cavia porcellus ENSCPOG00000003985 N 0.717
ENSPANG00000011105 Papio anubis ENSPANG00000011105 N 0.717
ENSECAG00000005186 Equus caballus ENSECAG00000005186 N 0.717
ENSOARG00000017078 Ovis aries ENSOARG00000017078 N 0.717
ENSPANG00000005029 Papio anubis ENSPANG00000005029 N 0.717
HMGB1 Microcebus murinus ENSMICG00000006213 N 0.717
Hmg1l1 Rattus norvegicus ENSRNOG00000034130 N 0.717
ENSMMUG00000001275 Macaca mulatta ENSMMUG00000001275 N 0.717
ENSCJAG00000008378 Callithrix jacchus ENSCJAG00000008378 N 0.713
ENSCJAG00000008384 Callithrix jacchus ENSCJAG00000008384 N 0.711
HMGB1 Bos taurus ENSBTAG00000014862 N 0.705
ENSPPYG00000011668 Pongo abelii ENSPPYG00000011668 N 0.705
Hmg1l1 Rattus norvegicus ENSRNOG00000051482 N 0.704
ENSECAG00000003655 Equus caballus ENSECAG00000003655 N 0.698
ENSOGAG00000028411 Otolemur garnettii ENSOGAG00000028411 N 0.692
ENSOARG00000011611 Ovis aries ENSOARG00000011611 N 0.686
ENSTBEG00000016187 Tupaia belangeri ENSTBEG00000016187 N 0.682
ENSOCUG00000004133 Oryctolagus cuniculus ENSOCUG00000004133 N 0.676
ENSOGAG00000032152 Otolemur garnettii ENSOGAG00000032152 N 0.676
Myotis_brandtii_Hmgb1_10026956 Myotis brandtii Myotis_brandtii_Hmgb1_10026956 N 0.674
ENSOGAG00000032240 Otolemur garnettii ENSOGAG00000032240 N 0.670
LOC100911637 Rattus norvegicus ENSRNOG00000048094 N 0.670
LOC100911637 Rattus norvegicus ENSRNOG00000048471 N 0.670
Myotis_brandtii_Hmgb1_10003213 Myotis brandtii Myotis_brandtii_Hmgb1_10003213 N 0.666
ENSCJAG00000022832 Callithrix jacchus ENSCJAG00000022832 N 0.663
ENSDNOG00000005537 Dasypus novemcinctus ENSDNOG00000005537 N 0.660
Hmgb1-ps3 Rattus norvegicus ENSRNOG00000032420 N 0.659
ENSGGOG00000025109 Gorilla gorilla ENSGGOG00000025109 N 0.659
Myotis_brandtii_Hmgb2_10018437 Myotis brandtii Myotis_brandtii_Hmgb2_10018437 N 0.654
ENSOARG00000015382 Ovis aries ENSOARG00000015382 N 0.649
ENSOARG00000010383 Ovis aries ENSOARG00000010383 N 0.649
ENSOARG00000015955 Ovis aries ENSOARG00000015955 N 0.649
ENSPANG00000007527 Papio anubis ENSPANG00000007527 N 0.649
AABR07025074.1 Rattus norvegicus ENSRNOG00000032550 N 0.643
AAC59859 Xenopus laevis AAC59859 N 0.642
Hmgb2l1 Rattus norvegicus ENSRNOG00000013167 N 0.642
AAH73449 Xenopus laevis AAH73449 N 0.642
ENSTBEG00000009427 Tupaia belangeri ENSTBEG00000009427 N 0.642
Hmgb2 Rattus norvegicus ENSRNOG00000033321 N 0.642
RGD1561694 Rattus norvegicus ENSRNOG00000029107 N 0.639
ENSMICG00000016224 Microcebus murinus ENSMICG00000016224 N 0.635
ENSOGAG00000034801 Otolemur garnettii ENSOGAG00000034801 N 0.635
ENSOCUG00000021132 Oryctolagus cuniculus ENSOCUG00000021132 N 0.634
ENSTBEG00000014925 Tupaia belangeri ENSTBEG00000014925 N 0.632
hmgb2.S Xenopus laevis XB-GENE-1000251 N 0.630
ENSONIG00000005505 Oreochromis niloticus ENSONIG00000005505 N 0.629
ENSTBEG00000012989 Tupaia belangeri ENSTBEG00000012989 N 0.628
ENSGGOG00000007804 Gorilla gorilla ENSGGOG00000007804 N 0.628
ENSXMAG00000006844 Xiphophorus maculatus ENSXMAG00000006844 N 0.624
ENSBTAP00000049357-D1 Bos grunniens ENSBTAP00000049357-D1 N 0.624
ENSOGAG00000033437 Otolemur garnettii ENSOGAG00000033437 N 0.619
ENSOCUG00000023449 Oryctolagus cuniculus ENSOCUG00000023449 N 0.618
hmgb1b Takifugu rubripes ENSTRUG00000004822 N 0.616
ENSFCAG00000028961 Felis catus ENSFCAG00000028961 N 0.616
HMGB2 Sus scrofa ENSSSCG00000009704 N 0.615
BAA06440 Xenopus laevis BAA06440 N 0.614
ENSOGAG00000032147 Otolemur garnettii ENSOGAG00000032147 N 0.613
ENSPFOG00000008464 Poecilia formosa ENSPFOG00000008464 N 0.612
ENSDNOG00000046844 Dasypus novemcinctus ENSDNOG00000046844 N 0.612
hmgb1a Danio rerio ENSDARG00000099175 N 0.611
ENSTBEG00000017117 Tupaia belangeri ENSTBEG00000017117 N 0.610
HMGB2 Macaca mulatta ENSMMUG00000020008 N 0.610
ENSAMXG00000014832 Astyanax mexicanus ENSAMXG00000014832 N 0.610
RGD1563668 Rattus norvegicus ENSRNOG00000038478 N 0.609
ENSPFOG00000004533 Poecilia formosa ENSPFOG00000004533 N 0.606
ENSOGAG00000029748 Otolemur garnettii ENSOGAG00000029748 N 0.606
ENSOCUG00000027747 Oryctolagus cuniculus ENSOCUG00000027747 N 0.604
ENSGMOG00000010657 Gadus morhua ENSGMOG00000010657 N 0.603
ENSOGAG00000027410 Otolemur garnettii ENSOGAG00000027410 N 0.603
HMGB1 Monodelphis domestica ENSMODG00000004443 N 0.602
ENSDNOG00000047452 Dasypus novemcinctus ENSDNOG00000047452 N 0.602
AABR07019870.1 Rattus norvegicus ENSRNOG00000038033 N 0.600
ENSMMUG00000019832 Macaca mulatta ENSMMUG00000019832 N 0.600
ENSOARG00000005357 Ovis aries ENSOARG00000005357 N 0.599
hmgb1a Takifugu rubripes ENSTRUG00000008452 N 0.598
ENSOGAG00000028007 Otolemur garnettii ENSOGAG00000028007 N 0.596
ENSCAFG00000023930 Canis familiaris ENSCAFG00000023930 N 0.594
ENSTSYG00000003868 Tarsius syrichta ENSTSYG00000003868 N 0.593
ENSMMUG00000002662 Macaca mulatta ENSMMUG00000002662 N 0.592
ENSMLUG00000028530 Myotis lucifugus ENSMLUG00000028530 N 0.592
ENSMMUP00000039817 Macaca fascicularis ENSMMUP00000039817 N 0.591
ENSOGAG00000030052 Otolemur garnettii ENSOGAG00000030052 N 0.589
ENSBTAG00000020685 Bos taurus ENSBTAG00000020685 N 0.588
ENSOGAG00000030563 Otolemur garnettii ENSOGAG00000030563 N 0.587
hmgb1a Tetraodon nigroviridis ENSTNIG00000009909 N 0.586
ENSCJAG00000014214 Callithrix jacchus ENSCJAG00000014214 N 0.584
ENSMODG00000004606 Monodelphis domestica ENSMODG00000004606 N 0.582
ENSSSCG00000020770 Sus scrofa ENSSSCG00000020770 N 0.579
LOC688583 Rattus norvegicus ENSRNOG00000050910 N 0.579
ENSCSAG00000013078 Chlorocebus sabaeus ENSCSAG00000013078 N 0.579
ENSCJAG00000014197 Callithrix jacchus ENSCJAG00000014197 N 0.579
ENSCJAG00000033322 Callithrix jacchus ENSCJAG00000033322 N 0.579
ENSSSCG00000024283 Sus scrofa ENSSSCG00000024283 N 0.579
ENSMPUG00000018359 Mustela putorius furo ENSMPUG00000018359 N 0.579
ENSSTOG00000007009 Ictidomys tridecemlineatus ENSSTOG00000007009 N 0.578
AABR07060165.1 Rattus norvegicus ENSRNOG00000048544 N 0.575
hmgb2a Danio rerio ENSDARG00000029722 N 0.575
ENSTBEG00000005874 Tupaia belangeri ENSTBEG00000005874 N 0.574
ENSOGAG00000032325 Otolemur garnettii ENSOGAG00000032325 N 0.574
hmgb1b Gasterosteus aculeatus ENSGACG00000011447 N 0.573
hmgb1a Oryzias latipes ENSORLG00000003400 N 0.573
ENSBTAG00000031711 Bos taurus ENSBTAG00000031711 N 0.573
ENSTBEG00000015340 Tupaia belangeri ENSTBEG00000015340 N 0.567
ENSSTOG00000012404 Ictidomys tridecemlineatus ENSSTOG00000012404 N 0.562
ENSPANG00000010595 Papio anubis ENSPANG00000010595 N 0.560
ENSTBEG00000015758 Tupaia belangeri ENSTBEG00000015758 N 0.560
ENSOGAG00000031959 Otolemur garnettii ENSOGAG00000031959 N 0.558
HMGB3 Oryctolagus cuniculus ENSOCUG00000024959 N 0.558
ENSMEUG00000011289 Macropus eugenii ENSMEUG00000011289 N 0.557
ENSBTAP00000049034-D1 Bos grunniens ENSBTAP00000049034-D1 N 0.555
ENSBTAG00000005098 Bos taurus ENSBTAG00000005098 N 0.555
ENSCJAG00000014991 Callithrix jacchus ENSCJAG00000014991 N 0.555
ENSAMEG00000011652 Ailuropoda melanoleuca ENSAMEG00000011652 N 0.553
ENSOGAG00000024497 Otolemur garnettii ENSOGAG00000024497 N 0.553
ENSGGOG00000025769 Gorilla gorilla ENSGGOG00000025769 N 0.551
ENSCJAG00000010744 Callithrix jacchus ENSCJAG00000010744 N 0.551
ENSONIG00000019935 Oreochromis niloticus ENSONIG00000019935 N 0.549
ENSOGAG00000010941 Otolemur garnettii ENSOGAG00000010941 N 0.549
ENSOCUG00000016030 Oryctolagus cuniculus ENSOCUG00000016030 N 0.547
ENSGMOG00000010060 Gadus morhua ENSGMOG00000010060 N 0.546
AAI68534 Xenopus tropicalis AAI68534 N 0.545
ENSDNOG00000041663 Dasypus novemcinctus ENSDNOG00000041663 N 0.545
ENSCJAG00000017053 Callithrix jacchus ENSCJAG00000017053 N 0.545
hmgb2b Gasterosteus aculeatus ENSGACG00000001173 N 0.544
ENSCJAG00000007095 Callithrix jacchus ENSCJAG00000007095 N 0.544
ENSOGAG00000027183 Otolemur garnettii ENSOGAG00000027183 N 0.540
ENSTSYG00000012587 Tarsius syrichta ENSTSYG00000012587 N 0.538
Myotis_brandtii_HMGB3_10026974 Myotis brandtii Myotis_brandtii_HMGB3_10026974 N 0.537
ENSXMAG00000011106 Xiphophorus maculatus ENSXMAG00000011106 N 0.535
hmgb2b Tetraodon nigroviridis ENSTNIG00000004824 N 0.535
hmgb2b Oryzias latipes ENSORLG00000018687 N 0.535
hmgb2b Takifugu rubripes ENSTRUG00000005015 N 0.535
ENSPFOG00000004794 Poecilia formosa ENSPFOG00000004794 N 0.535
ENSCSAG00000015385 Chlorocebus sabaeus ENSCSAG00000015385 N 0.529
ENSCJAG00000007419 Callithrix jacchus ENSCJAG00000007419 N 0.529
ENSMPUG00000020113 Mustela putorius furo ENSMPUG00000020113 N 0.528
ENSOGAG00000033550 Otolemur garnettii ENSOGAG00000033550 N 0.528
ENSGGOG00000023265 Gorilla gorilla ENSGGOG00000023265 N 0.527
ENSAMXG00000014031 Astyanax mexicanus ENSAMXG00000014031 N 0.527
ENSPANG00000023341 Papio anubis ENSPANG00000023341 N 0.522
ENSOGAG00000029272 Otolemur garnettii ENSOGAG00000029272 N 0.520
ENSMEUG00000016024 Macropus eugenii ENSMEUG00000016024 N 0.519
ENSLAFG00000030388 Loxodonta africana ENSLAFG00000030388 N 0.517
ENSPMAG00000007397 Petromyzon marinus ENSPMAG00000007397 N 0.515
ENSCJAG00000004401 Callithrix jacchus ENSCJAG00000004401 N 0.515
AAH44009 Xenopus laevis AAH44009 N 0.515
ENSPPYG00000020229 Pongo abelii ENSPPYG00000020229 N 0.514
ENSTBEG00000005706 Tupaia belangeri ENSTBEG00000005706 N 0.514
ENSCJAG00000011146 Callithrix jacchus ENSCJAG00000011146 N 0.512
ENSPANG00000020000 Papio anubis ENSPANG00000020000 N 0.512
ENSOGAG00000033253 Otolemur garnettii ENSOGAG00000033253 N 0.512
ENSCJAG00000005187 Callithrix jacchus ENSCJAG00000005187 I 0.511
ENSPANG00000025478 Papio anubis ENSPANG00000025478 N 0.511
ENSCJAG00000007594 Callithrix jacchus ENSCJAG00000007594 N 0.510
ENSCSAG00000010707 Chlorocebus sabaeus ENSCSAG00000010707 N 0.510
hmgb3b Danio rerio ENSDARG00000006408 N 0.508
ENSMEUG00000009480 Macropus eugenii ENSMEUG00000009480 N 0.507
ENSCJAG00000033913 Callithrix jacchus ENSCJAG00000033913 N 0.502
ENSDNOG00000042649 Dasypus novemcinctus ENSDNOG00000042649 N 0.500
ENSBTAP00000052990-D1 Bos grunniens ENSBTAP00000052990-D1 N 0.497
HMGB1 Gorilla gorilla ENSGGOG00000026606 N 0.497
ENSBTAG00000015315 Bos taurus ENSBTAG00000015315 N 0.497
ENSMMUG00000018606 Macaca mulatta ENSMMUG00000018606 N 0.494
ENSGGOG00000026945 Gorilla gorilla ENSGGOG00000026945 N 0.492
ENSOARG00000019147 Ovis aries ENSOARG00000019147 N 0.487
ENSOGAG00000006589 Otolemur garnettii ENSOGAG00000006589 N 0.487
SMAR013695 Strigamia maritima SMAR013695 N 0.484
ENSMMUG00000010106 Macaca mulatta ENSMMUG00000010106 I 0.483
ENSETEG00000013458 Echinops telfairi ENSETEG00000013458 N 0.483
HelroG157726 Helobdella robusta HelroG157726 N 0.483
HelroG157878 Helobdella robusta HelroG157878 N 0.482
CapteG158220 Capitella teleta CapteG158220 N 0.481
ENSDNOG00000035552 Dasypus novemcinctus ENSDNOG00000035552 N 0.480
ENSCSAVG00000000341 Ciona savignyi ENSCSAVG00000000341 N 0.479
ENSTBEG00000013375 Tupaia belangeri ENSTBEG00000013375 N 0.479
Sakowv30042012m.g Saccoglossus kowalevskii Sakowv30042012m.g N 0.472
AABR07060287.1 Rattus norvegicus ENSRNOG00000049746 N 0.470
ENSCSAG00000012719 Chlorocebus sabaeus ENSCSAG00000012719 N 0.468
ENSMMUG00000007761 Macaca mulatta ENSMMUG00000007761 N 0.466
hmg1/2 Ciona intestinalis ENSCING00000004075 N 0.466
ENSMMUP00000010196 Macaca fascicularis ENSMMUP00000010196 N 0.466
ENSETEG00000009246 Echinops telfairi ENSETEG00000009246 N 0.465
ENSGGOG00000027139 Gorilla gorilla ENSGGOG00000027139 N 0.464
ENSCJAG00000003900 Callithrix jacchus ENSCJAG00000003900 N 0.461
ENSMICG00000000573 Microcebus murinus ENSMICG00000000573 N 0.458
ENSBTAP00000049357-D3 Bos grunniens ENSBTAP00000049357-D3 N 0.458
ENSGGOG00000025145 Gorilla gorilla ENSGGOG00000025145 N 0.456
ENSCJAG00000034265 Callithrix jacchus ENSCJAG00000034265 N 0.455
MCOS_0000526101 Mesocestoides corti MCOS_0000526101 N 0.455
HMGB1 Tupaia belangeri ENSTBEG00000013046 N 0.453
ENSOGAG00000028737 Otolemur garnettii ENSOGAG00000028737 N 0.452
TsM_000115400 Taenia solium TsM_000115400 N 0.452
EmuJ_001049000 Echinococcus multilocularis EmuJ_001049000 N 0.452
ENSDNOG00000033430 Dasypus novemcinctus ENSDNOG00000033430 N 0.450
tetur02g08260 Tetranychus urticae tetur02g08260 N 0.448
tetur02g08340 Tetranychus urticae tetur02g08340 N 0.448
ENSTBEG00000013995 Tupaia belangeri ENSTBEG00000013995 N 0.448
ENSMMUP00000017448 Macaca fascicularis ENSMMUP00000017448 N 0.446
ENSMMUG00000013266 Macaca mulatta ENSMMUG00000013266 N 0.446
ENSOGAG00000007401 Otolemur garnettii ENSOGAG00000007401 N 0.446
ENSMPUG00000000121 Mustela putorius furo ENSMPUG00000000121 N 0.444
PXEA_0002175501 Protopolystoma xenopodis PXEA_0002175501 N 0.443
ISCW017350 Ixodes scapularis ISCW017350 N 0.443
ENSOARG00000002938 Ovis aries ENSOARG00000002938 N 0.442
Alligator_sinensis_CCG007907.1 Alligator sinensis Alligator_sinensis_CCG007907.1 N 0.442
LotgiG200052 Lottia gigantea LotgiG200052 N 0.440
ENSOGAG00000033658 Otolemur garnettii ENSOGAG00000033658 N 0.436
ACYPI007949 Acyrthosiphon pisum ACYPI007949 N 0.435
ENSMICG00000010120 Microcebus murinus ENSMICG00000010120 N 0.435
ENSMMUP00000003419 Macaca fascicularis ENSMMUP00000003419 N 0.434
SMU15027649 Schmidtea mediterranea SMU15027649 N 0.433
ENSCJAG00000031139 Callithrix jacchus ENSCJAG00000031139 I 0.432
ENSCSAG00000017502 Chlorocebus sabaeus ENSCSAG00000017502 N 0.430
ENSMMUG00000002541 Macaca mulatta ENSMMUG00000002541 I 0.429
ENSOARG00000020499 Ovis aries ENSOARG00000020499 N 0.429
NV15664 Nasonia vitripennis NV15664 N 0.426
ECANG7_07075 Echinococcus canadensis ECANG7_07075 N 0.425
EmuJ_000941400 Echinococcus multilocularis EmuJ_000941400 N 0.425
MCOS_0000588101 Mesocestoides corti MCOS_0000588101 N 0.425
ENSCSAG00000001500 Chlorocebus sabaeus ENSCSAG00000001500 N 0.424
CpipJ_CPIJ014043 Culex pipiens CpipJ_CPIJ014043 N 0.423
ENSGGOG00000023427 Gorilla gorilla ENSGGOG00000023427 N 0.423
CPIJ014043 Culex quinquefasciatus CPIJ014043 N 0.423
T265_12733 Opisthorchis viverrini T265_12733 N 0.420
TTAC_0000225801 Hydatigera taeniaeformis TTAC_0000225801 N 0.419
ECANG7_02036 Echinococcus canadensis ECANG7_02036 N 0.419
ENSCJAG00000007044 Callithrix jacchus ENSCJAG00000007044 N 0.419
SMU15030256 Schmidtea mediterranea SMU15030256 N 0.418
ENSOCUG00000026247 Oryctolagus cuniculus ENSOCUG00000026247 N 0.416
ENSCHOG00000001924 Choloepus hoffmanni ENSCHOG00000001924 N 0.416
ENSTGUG00000006267 Taeniopygia guttata ENSTGUG00000006267 N 0.416
HmN_000761000 Hymenolepis microstoma HmN_000761000 N 0.415