RGD1563668 (Rattus norvegicus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSRNOG00000038478 T329059_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000055435 Sox 11 79
ENSRNOP00000055435 Sox 95 163

Links

Other Sox family TFs
Other Rattus norvegicus TFs

209 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSOCUG00000004133 Oryctolagus cuniculus ENSOCUG00000004133 N 0.658
Hmgb1-ps3 Rattus norvegicus ENSRNOG00000032420 N 0.648
ENSCJAG00000022832 Callithrix jacchus ENSCJAG00000022832 N 0.645
ENSDNOG00000005537 Dasypus novemcinctus ENSDNOG00000005537 N 0.642
Myotis_brandtii_Hmgb2_10018437 Myotis brandtii Myotis_brandtii_Hmgb2_10018437 N 0.635
LOC100911637 Rattus norvegicus ENSRNOG00000048094 N 0.633
LOC100911637 Rattus norvegicus ENSRNOG00000048471 N 0.633
ENSPANG00000005029 Papio anubis ENSPANG00000005029 N 0.631
ENSECAG00000005186 Equus caballus ENSECAG00000005186 N 0.631
ENSCPOG00000003985 Cavia porcellus ENSCPOG00000003985 N 0.631
ENSPANG00000011105 Papio anubis ENSPANG00000011105 N 0.631
HMGB1 Microcebus murinus ENSMICG00000006213 N 0.631
ENSMODG00000009238 Monodelphis domestica ENSMODG00000009238 N 0.631
AC135696.1 Rattus norvegicus ENSRNOG00000058908 N 0.631
Hmg1l1 Rattus norvegicus ENSRNOG00000034130 N 0.631
ENSOARG00000017078 Ovis aries ENSOARG00000017078 N 0.631
ENSSTOG00000000443 Ictidomys tridecemlineatus ENSSTOG00000000443 N 0.631
ENSMMUG00000001275 Macaca mulatta ENSMMUG00000001275 N 0.631
ENSOARG00000015955 Ovis aries ENSOARG00000015955 N 0.630
ENSOARG00000015382 Ovis aries ENSOARG00000015382 N 0.630
ENSPANG00000007527 Papio anubis ENSPANG00000007527 N 0.630
ENSOARG00000010383 Ovis aries ENSOARG00000010383 N 0.630
ENSCJAG00000008378 Callithrix jacchus ENSCJAG00000008378 N 0.626
AABR07025074.1 Rattus norvegicus ENSRNOG00000032550 N 0.625
Hmgb2 Rattus norvegicus ENSRNOG00000033321 N 0.624
Hmgb2l1 Rattus norvegicus ENSRNOG00000013167 N 0.624
ENSTBEG00000009427 Tupaia belangeri ENSTBEG00000009427 N 0.624
ENSCJAG00000008384 Callithrix jacchus ENSCJAG00000008384 N 0.624
RGD1561694 Rattus norvegicus ENSRNOG00000029107 N 0.621
ENSDNOG00000047452 Dasypus novemcinctus ENSDNOG00000047452 N 0.621
HMGB1 Bos taurus ENSBTAG00000014862 N 0.618
ENSPPYG00000011668 Pongo abelii ENSPPYG00000011668 N 0.618
Hmg1l1 Rattus norvegicus ENSRNOG00000051482 N 0.617
ENSMICG00000016224 Microcebus murinus ENSMICG00000016224 N 0.617
ENSOCUG00000021132 Oryctolagus cuniculus ENSOCUG00000021132 N 0.616
ENSGGOG00000007804 Gorilla gorilla ENSGGOG00000007804 N 0.616
ENSECAG00000003655 Equus caballus ENSECAG00000003655 N 0.612
hmgb2.S Xenopus laevis XB-GENE-1000251 N 0.611
ENSTBEG00000012989 Tupaia belangeri ENSTBEG00000012989 N 0.610
LOC108350839 Rattus norvegicus ENSRNOG00000038437 N 0.609
ENSCAFG00000023930 Canis familiaris ENSCAFG00000023930 N 0.607
ENSOGAG00000028411 Otolemur garnettii ENSOGAG00000028411 N 0.605
ENSGGOG00000025109 Gorilla gorilla ENSGGOG00000025109 N 0.603
ENSOARG00000011611 Ovis aries ENSOARG00000011611 N 0.600
ENSFCAG00000028961 Felis catus ENSFCAG00000028961 N 0.598
HMGB2 Sus scrofa ENSSSCG00000009704 N 0.596
BAA06440 Xenopus laevis BAA06440 N 0.595
ENSTBEG00000016187 Tupaia belangeri ENSTBEG00000016187 N 0.595
hmgb1a Danio rerio ENSDARG00000099175 N 0.593
ENSPFOG00000008464 Poecilia formosa ENSPFOG00000008464 N 0.593
ENSAMXG00000014832 Astyanax mexicanus ENSAMXG00000014832 N 0.592
HMGB2 Macaca mulatta ENSMMUG00000020008 N 0.591
ENSOGAG00000032152 Otolemur garnettii ENSOGAG00000032152 N 0.589
Myotis_brandtii_Hmgb1_10026956 Myotis brandtii Myotis_brandtii_Hmgb1_10026956 N 0.587
ENSOCUG00000027747 Oryctolagus cuniculus ENSOCUG00000027747 N 0.585
hmgb1a Takifugu rubripes ENSTRUG00000008452 N 0.579
Myotis_brandtii_Hmgb1_10003213 Myotis brandtii Myotis_brandtii_Hmgb1_10003213 N 0.579
ENSBTAP00000049357-D1 Bos grunniens ENSBTAP00000049357-D1 N 0.575
ENSOGAG00000033437 Otolemur garnettii ENSOGAG00000033437 N 0.575
ENSOGAG00000030563 Otolemur garnettii ENSOGAG00000030563 N 0.569
ENSOCUG00000023449 Oryctolagus cuniculus ENSOCUG00000023449 N 0.568
hmgb1a Tetraodon nigroviridis ENSTNIG00000009909 N 0.568
ENSAMEG00000011652 Ailuropoda melanoleuca ENSAMEG00000011652 N 0.566
ENSCJAG00000014214 Callithrix jacchus ENSCJAG00000014214 N 0.565
ENSTBEG00000017117 Tupaia belangeri ENSTBEG00000017117 N 0.564
AAC59859 Xenopus laevis AAC59859 N 0.562
HMGB1 Monodelphis domestica ENSMODG00000004443 N 0.562
AAH73449 Xenopus laevis AAH73449 N 0.562
LOC688583 Rattus norvegicus ENSRNOG00000050910 N 0.560
ENSMPUG00000018359 Mustela putorius furo ENSMPUG00000018359 N 0.560
ENSSSCG00000024283 Sus scrofa ENSSSCG00000024283 N 0.560
ENSCJAG00000033322 Callithrix jacchus ENSCJAG00000033322 N 0.560
ENSCSAG00000013078 Chlorocebus sabaeus ENSCSAG00000013078 N 0.560
ENSCJAG00000014197 Callithrix jacchus ENSCJAG00000014197 N 0.560
ENSSTOG00000007009 Ictidomys tridecemlineatus ENSSTOG00000007009 N 0.560
ENSSSCG00000020770 Sus scrofa ENSSSCG00000020770 N 0.560
hmgb2a Danio rerio ENSDARG00000029722 N 0.557
ENSDNOG00000046844 Dasypus novemcinctus ENSDNOG00000046844 N 0.556
ENSOGAG00000028007 Otolemur garnettii ENSOGAG00000028007 N 0.555
ENSBTAG00000031711 Bos taurus ENSBTAG00000031711 N 0.554
hmgb1a Oryzias latipes ENSORLG00000003400 N 0.554
hmgb1b Gasterosteus aculeatus ENSGACG00000011447 N 0.552
ENSOGAG00000027410 Otolemur garnettii ENSOGAG00000027410 N 0.551
ENSCSAG00000015385 Chlorocebus sabaeus ENSCSAG00000015385 N 0.548
ENSTBEG00000014925 Tupaia belangeri ENSTBEG00000014925 N 0.545
ENSOGAG00000032240 Otolemur garnettii ENSOGAG00000032240 N 0.545
ENSSTOG00000012404 Ictidomys tridecemlineatus ENSSTOG00000012404 N 0.544
ENSONIG00000005505 Oreochromis niloticus ENSONIG00000005505 N 0.542
ENSPANG00000010595 Papio anubis ENSPANG00000010595 N 0.541
ENSCJAG00000014991 Callithrix jacchus ENSCJAG00000014991 N 0.541
ENSCJAG00000010744 Callithrix jacchus ENSCJAG00000010744 N 0.540
ENSMMUG00000010106 Macaca mulatta ENSMMUG00000010106 I 0.540
HMGB3 Oryctolagus cuniculus ENSOCUG00000024959 N 0.539
ENSOGAG00000010941 Otolemur garnettii ENSOGAG00000010941 N 0.538
ENSXMAG00000006844 Xiphophorus maculatus ENSXMAG00000006844 N 0.537
ENSPPYG00000020229 Pongo abelii ENSPPYG00000020229 N 0.534
ENSOGAG00000032325 Otolemur garnettii ENSOGAG00000032325 N 0.533
ENSONIG00000019935 Oreochromis niloticus ENSONIG00000019935 N 0.531
hmgb1b Takifugu rubripes ENSTRUG00000004822 N 0.529
ENSGMOG00000010060 Gadus morhua ENSGMOG00000010060 N 0.527
AAI68534 Xenopus tropicalis AAI68534 N 0.527
ENSOGAG00000032147 Otolemur garnettii ENSOGAG00000032147 N 0.526
ENSOGAG00000034801 Otolemur garnettii ENSOGAG00000034801 N 0.526
ENSTSYG00000012587 Tarsius syrichta ENSTSYG00000012587 N 0.526
hmgb2b Gasterosteus aculeatus ENSGACG00000001173 N 0.526
ENSMMUG00000019832 Macaca mulatta ENSMMUG00000019832 N 0.525
ENSOARG00000005357 Ovis aries ENSOARG00000005357 N 0.525
ENSCJAG00000007095 Callithrix jacchus ENSCJAG00000007095 N 0.525
ENSPFOG00000004533 Poecilia formosa ENSPFOG00000004533 N 0.520
Myotis_brandtii_HMGB3_10026974 Myotis brandtii Myotis_brandtii_HMGB3_10026974 N 0.519
ENSOGAG00000030052 Otolemur garnettii ENSOGAG00000030052 N 0.518
hmgb2b Takifugu rubripes ENSTRUG00000005015 N 0.517
hmgb2b Tetraodon nigroviridis ENSTNIG00000004824 N 0.517
hmgb2b Oryzias latipes ENSORLG00000018687 N 0.517
ENSXMAG00000011106 Xiphophorus maculatus ENSXMAG00000011106 N 0.517
ENSPFOG00000004794 Poecilia formosa ENSPFOG00000004794 N 0.517
ENSOGAG00000031959 Otolemur garnettii ENSOGAG00000031959 N 0.517
ENSGMOG00000010657 Gadus morhua ENSGMOG00000010657 N 0.516
ENSMEUG00000011289 Macropus eugenii ENSMEUG00000011289 N 0.514
ENSBTAG00000020685 Bos taurus ENSBTAG00000020685 N 0.513
AABR07019870.1 Rattus norvegicus ENSRNOG00000038033 N 0.513
ENSCJAG00000007419 Callithrix jacchus ENSCJAG00000007419 N 0.511
ENSTBEG00000015340 Tupaia belangeri ENSTBEG00000015340 N 0.511
ENSMPUG00000020113 Mustela putorius furo ENSMPUG00000020113 N 0.510
ENSAMXG00000014031 Astyanax mexicanus ENSAMXG00000014031 N 0.506
ENSTSYG00000003868 Tarsius syrichta ENSTSYG00000003868 N 0.506
ENSMLUG00000028530 Myotis lucifugus ENSMLUG00000028530 N 0.505
ENSMMUG00000002662 Macaca mulatta ENSMMUG00000002662 N 0.505
ENSMMUP00000039817 Macaca fascicularis ENSMMUP00000039817 N 0.504
ENSPANG00000023341 Papio anubis ENSPANG00000023341 N 0.503
ENSMODG00000004606 Monodelphis domestica ENSMODG00000004606 N 0.502
ENSOGAG00000029272 Otolemur garnettii ENSOGAG00000029272 N 0.502
ENSOGAG00000006589 Otolemur garnettii ENSOGAG00000006589 N 0.500
ENSCJAG00000004401 Callithrix jacchus ENSCJAG00000004401 N 0.499
AAH44009 Xenopus laevis AAH44009 N 0.497
ENSOGAG00000029748 Otolemur garnettii ENSOGAG00000029748 N 0.497
ENSPMAG00000007397 Petromyzon marinus ENSPMAG00000007397 N 0.496
ENSOCUG00000016030 Oryctolagus cuniculus ENSOCUG00000016030 N 0.495
hmgb3b Danio rerio ENSDARG00000006408 N 0.495
ENSCJAG00000005187 Callithrix jacchus ENSCJAG00000005187 I 0.493
ENSPANG00000025478 Papio anubis ENSPANG00000025478 N 0.493
ENSCJAG00000011146 Callithrix jacchus ENSCJAG00000011146 N 0.493
ENSDNOG00000041663 Dasypus novemcinctus ENSDNOG00000041663 N 0.493
ENSCJAG00000007594 Callithrix jacchus ENSCJAG00000007594 N 0.492
ENSCSAG00000010707 Chlorocebus sabaeus ENSCSAG00000010707 N 0.491
ENSBTAG00000005098 Bos taurus ENSBTAG00000005098 N 0.491
ENSBTAP00000049034-D1 Bos grunniens ENSBTAP00000049034-D1 N 0.491
ENSOGAG00000007401 Otolemur garnettii ENSOGAG00000007401 N 0.490
ENSTBEG00000005874 Tupaia belangeri ENSTBEG00000005874 N 0.488
AABR07060165.1 Rattus norvegicus ENSRNOG00000048544 N 0.486
ENSTBEG00000015758 Tupaia belangeri ENSTBEG00000015758 N 0.485
ENSMMUG00000007761 Macaca mulatta ENSMMUG00000007761 N 0.485
ENSMMUP00000010196 Macaca fascicularis ENSMMUP00000010196 N 0.485
ENSBTAP00000052990-D1 Bos grunniens ENSBTAP00000052990-D1 N 0.478
ENSBTAG00000015315 Bos taurus ENSBTAG00000015315 N 0.478
HelroG157726 Helobdella robusta HelroG157726 N 0.477
ENSGGOG00000027139 Gorilla gorilla ENSGGOG00000027139 N 0.476
HelroG157878 Helobdella robusta HelroG157878 N 0.476
SMAR013695 Strigamia maritima SMAR013695 N 0.475
ENSOARG00000019147 Ovis aries ENSOARG00000019147 N 0.475
CapteG158220 Capitella teleta CapteG158220 N 0.475
ENSGGOG00000026945 Gorilla gorilla ENSGGOG00000026945 N 0.473
ENSOGAG00000033253 Otolemur garnettii ENSOGAG00000033253 N 0.472
ENSPANG00000020000 Papio anubis ENSPANG00000020000 N 0.472
ENSTBEG00000005706 Tupaia belangeri ENSTBEG00000005706 N 0.470
ENSDNOG00000033430 Dasypus novemcinctus ENSDNOG00000033430 N 0.469
ENSLAFG00000030388 Loxodonta africana ENSLAFG00000030388 N 0.468
ENSCSAVG00000000341 Ciona savignyi ENSCSAVG00000000341 N 0.464
ENSGGOG00000025769 Gorilla gorilla ENSGGOG00000025769 N 0.464
Sakowv30042012m.g Saccoglossus kowalevskii Sakowv30042012m.g N 0.457
ENSOGAG00000024497 Otolemur garnettii ENSOGAG00000024497 N 0.456
ENSOGAG00000033658 Otolemur garnettii ENSOGAG00000033658 N 0.455
ENSOGAG00000033550 Otolemur garnettii ENSOGAG00000033550 N 0.453
ENSCJAG00000017053 Callithrix jacchus ENSCJAG00000017053 N 0.451
AABR07060287.1 Rattus norvegicus ENSRNOG00000049746 N 0.451
hmg1/2 Ciona intestinalis ENSCING00000004075 N 0.451
ENSDNOG00000042649 Dasypus novemcinctus ENSDNOG00000042649 N 0.450
ENSCSAG00000001500 Chlorocebus sabaeus ENSCSAG00000001500 N 0.449
ENSMMUP00000003419 Macaca fascicularis ENSMMUP00000003419 N 0.447
ENSCJAG00000003900 Callithrix jacchus ENSCJAG00000003900 N 0.443
ENSMMUG00000002541 Macaca mulatta ENSMMUG00000002541 I 0.441
ENSMICG00000000573 Microcebus murinus ENSMICG00000000573 N 0.440
MCOS_0000588101 Mesocestoides corti MCOS_0000588101 N 0.440
ENSMEUG00000016024 Macropus eugenii ENSMEUG00000016024 N 0.439
EmuJ_001049000 Echinococcus multilocularis EmuJ_001049000 N 0.437
MCOS_0000526101 Mesocestoides corti MCOS_0000526101 N 0.437
ENSBTAP00000049357-D3 Bos grunniens ENSBTAP00000049357-D3 N 0.437
TsM_000115400 Taenia solium TsM_000115400 N 0.437
ENSTBEG00000013375 Tupaia belangeri ENSTBEG00000013375 N 0.436
tetur02g08340 Tetranychus urticae tetur02g08340 N 0.433
tetur02g08260 Tetranychus urticae tetur02g08260 N 0.433
ENSGGOG00000023265 Gorilla gorilla ENSGGOG00000023265 N 0.433
ENSCJAG00000007044 Callithrix jacchus ENSCJAG00000007044 N 0.432
ENSOGAG00000027183 Otolemur garnettii ENSOGAG00000027183 N 0.431
LotgiG200052 Lottia gigantea LotgiG200052 N 0.431
ISCW017350 Ixodes scapularis ISCW017350 N 0.428
PXEA_0002175501 Protopolystoma xenopodis PXEA_0002175501 N 0.428
ENSCJAG00000033913 Callithrix jacchus ENSCJAG00000033913 N 0.427
ACYPI007949 Acyrthosiphon pisum ACYPI007949 N 0.426
ENSMEUG00000009480 Macropus eugenii ENSMEUG00000009480 N 0.425
ENSMMUG00000018606 Macaca mulatta ENSMMUG00000018606 N 0.425
ENSOARG00000002938 Ovis aries ENSOARG00000002938 N 0.424
SMU15027649 Schmidtea mediterranea SMU15027649 N 0.424
NV15664 Nasonia vitripennis NV15664 N 0.417
ENSMICG00000010120 Microcebus murinus ENSMICG00000010120 N 0.417
HmN_000466000 Hymenolepis microstoma HmN_000466000 N 0.417
ENSOGAG00000028737 Otolemur garnettii ENSOGAG00000028737 N 0.417
HDID_0000237901 Hymenolepis diminuta HDID_0000237901 N 0.417
HNAJ_0001249801 Hymenolepis nana HNAJ_0001249801 N 0.417