LOC100911637 (Rattus norvegicus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSRNOG00000048094 T329063_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000065497 Sox 6 79
ENSRNOP00000065497 Sox 95 162

Links

Other Sox family TFs
Other Rattus norvegicus TFs

210 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LOC100911637 Rattus norvegicus ENSRNOG00000048471 N 0.741
ENSMODG00000009238 Monodelphis domestica ENSMODG00000009238 N 0.691
ENSCPOG00000003985 Cavia porcellus ENSCPOG00000003985 N 0.691
HMGB1 Microcebus murinus ENSMICG00000006213 N 0.691
ENSOARG00000017078 Ovis aries ENSOARG00000017078 N 0.691
ENSMMUG00000001275 Macaca mulatta ENSMMUG00000001275 N 0.691
ENSSTOG00000000443 Ictidomys tridecemlineatus ENSSTOG00000000443 N 0.691
AC135696.1 Rattus norvegicus ENSRNOG00000058908 N 0.691
Hmg1l1 Rattus norvegicus ENSRNOG00000034130 N 0.691
ENSPANG00000011105 Papio anubis ENSPANG00000011105 N 0.691
ENSPANG00000005029 Papio anubis ENSPANG00000005029 N 0.691
ENSECAG00000005186 Equus caballus ENSECAG00000005186 N 0.691
ENSCJAG00000008378 Callithrix jacchus ENSCJAG00000008378 N 0.687
ENSCJAG00000008384 Callithrix jacchus ENSCJAG00000008384 N 0.685
ENSPPYG00000011668 Pongo abelii ENSPPYG00000011668 N 0.679
HMGB1 Bos taurus ENSBTAG00000014862 N 0.678
Hmg1l1 Rattus norvegicus ENSRNOG00000051482 N 0.677
ENSECAG00000003655 Equus caballus ENSECAG00000003655 N 0.672
Hmgb1-ps3 Rattus norvegicus ENSRNOG00000032420 N 0.671
LOC108350839 Rattus norvegicus ENSRNOG00000038437 N 0.670
ENSOGAG00000028411 Otolemur garnettii ENSOGAG00000028411 N 0.666
ENSOARG00000011611 Ovis aries ENSOARG00000011611 N 0.660
ENSOCUG00000004133 Oryctolagus cuniculus ENSOCUG00000004133 N 0.659
ENSTBEG00000017117 Tupaia belangeri ENSTBEG00000017117 N 0.659
ENSTBEG00000016187 Tupaia belangeri ENSTBEG00000016187 N 0.656
ENSOGAG00000032152 Otolemur garnettii ENSOGAG00000032152 N 0.650
Myotis_brandtii_Hmgb1_10026956 Myotis brandtii Myotis_brandtii_Hmgb1_10026956 N 0.647
Myotis_brandtii_Hmgb1_10003213 Myotis brandtii Myotis_brandtii_Hmgb1_10003213 N 0.644
ENSGGOG00000007804 Gorilla gorilla ENSGGOG00000007804 N 0.639
ENSCJAG00000022832 Callithrix jacchus ENSCJAG00000022832 N 0.637
ENSDNOG00000005537 Dasypus novemcinctus ENSDNOG00000005537 N 0.634
RGD1563668 Rattus norvegicus ENSRNOG00000038478 N 0.633
Myotis_brandtii_Hmgb2_10018437 Myotis brandtii Myotis_brandtii_Hmgb2_10018437 N 0.628
AAC59859 Xenopus laevis AAC59859 N 0.627
AAH73449 Xenopus laevis AAH73449 N 0.627
ENSGGOG00000025109 Gorilla gorilla ENSGGOG00000025109 N 0.626
ENSOARG00000010383 Ovis aries ENSOARG00000010383 N 0.623
ENSOARG00000015955 Ovis aries ENSOARG00000015955 N 0.623
ENSOARG00000015382 Ovis aries ENSOARG00000015382 N 0.623
ENSPANG00000007527 Papio anubis ENSPANG00000007527 N 0.623
ENSMICG00000016224 Microcebus murinus ENSMICG00000016224 N 0.619
AABR07025074.1 Rattus norvegicus ENSRNOG00000032550 N 0.617
Hmgb2 Rattus norvegicus ENSRNOG00000033321 N 0.616
Hmgb2l1 Rattus norvegicus ENSRNOG00000013167 N 0.616
ENSTBEG00000009427 Tupaia belangeri ENSTBEG00000009427 N 0.615
ENSDNOG00000047452 Dasypus novemcinctus ENSDNOG00000047452 N 0.614
RGD1561694 Rattus norvegicus ENSRNOG00000029107 N 0.613
ENSOCUG00000021132 Oryctolagus cuniculus ENSOCUG00000021132 N 0.608
hmgb2.S Xenopus laevis XB-GENE-1000251 N 0.608
ENSTBEG00000014925 Tupaia belangeri ENSTBEG00000014925 N 0.606
ENSOGAG00000032240 Otolemur garnettii ENSOGAG00000032240 N 0.605
ENSONIG00000005505 Oreochromis niloticus ENSONIG00000005505 N 0.603
ENSTBEG00000012989 Tupaia belangeri ENSTBEG00000012989 N 0.602
ENSBTAP00000049357-D1 Bos grunniens ENSBTAP00000049357-D1 N 0.598
ENSXMAG00000006844 Xiphophorus maculatus ENSXMAG00000006844 N 0.597
BAA06440 Xenopus laevis BAA06440 N 0.592
ENSOCUG00000023449 Oryctolagus cuniculus ENSOCUG00000023449 N 0.591
ENSFCAG00000028961 Felis catus ENSFCAG00000028961 N 0.590
ENSPFOG00000008464 Poecilia formosa ENSPFOG00000008464 N 0.590
hmgb1b Takifugu rubripes ENSTRUG00000004822 N 0.590
HMGB2 Sus scrofa ENSSSCG00000009704 N 0.588
ENSOGAG00000032147 Otolemur garnettii ENSOGAG00000032147 N 0.587
ENSOGAG00000034801 Otolemur garnettii ENSOGAG00000034801 N 0.586
ENSDNOG00000046844 Dasypus novemcinctus ENSDNOG00000046844 N 0.586
hmgb1a Danio rerio ENSDARG00000099175 N 0.585
ENSAMXG00000014832 Astyanax mexicanus ENSAMXG00000014832 N 0.584
HMGB2 Macaca mulatta ENSMMUG00000020008 N 0.583
ENSGMOG00000010657 Gadus morhua ENSGMOG00000010657 N 0.581
ENSPFOG00000004533 Poecilia formosa ENSPFOG00000004533 N 0.580
AABR07019870.1 Rattus norvegicus ENSRNOG00000038033 N 0.579
ENSOCUG00000027747 Oryctolagus cuniculus ENSOCUG00000027747 N 0.577
ENSOGAG00000027410 Otolemur garnettii ENSOGAG00000027410 N 0.577
hmgb1a Takifugu rubripes ENSTRUG00000008452 N 0.576
ENSOGAG00000033437 Otolemur garnettii ENSOGAG00000033437 N 0.570
ENSMMUP00000039817 Macaca fascicularis ENSMMUP00000039817 N 0.570
ENSMLUG00000028530 Myotis lucifugus ENSMLUG00000028530 N 0.570
ENSCAFG00000023930 Canis familiaris ENSCAFG00000023930 N 0.568
ENSCJAG00000014991 Callithrix jacchus ENSCJAG00000014991 N 0.567
ENSTSYG00000003868 Tarsius syrichta ENSTSYG00000003868 N 0.567
ENSMMUG00000002662 Macaca mulatta ENSMMUG00000002662 N 0.566
hmgb1a Tetraodon nigroviridis ENSTNIG00000009909 N 0.565
ENSMODG00000004606 Monodelphis domestica ENSMODG00000004606 N 0.562
ENSCJAG00000010744 Callithrix jacchus ENSCJAG00000010744 N 0.562
ENSCJAG00000014214 Callithrix jacchus ENSCJAG00000014214 N 0.562
ENSOGAG00000030563 Otolemur garnettii ENSOGAG00000030563 N 0.561
ENSCSAG00000013078 Chlorocebus sabaeus ENSCSAG00000013078 N 0.557
ENSCJAG00000033322 Callithrix jacchus ENSCJAG00000033322 N 0.557
ENSMPUG00000018359 Mustela putorius furo ENSMPUG00000018359 N 0.557
ENSSSCG00000020770 Sus scrofa ENSSSCG00000020770 N 0.557
ENSOGAG00000029748 Otolemur garnettii ENSOGAG00000029748 N 0.557
ENSSSCG00000024283 Sus scrofa ENSSSCG00000024283 N 0.557
LOC688583 Rattus norvegicus ENSRNOG00000050910 N 0.557
HMGB1 Monodelphis domestica ENSMODG00000004443 N 0.554
hmgb2a Danio rerio ENSDARG00000029722 N 0.554
ENSTBEG00000005874 Tupaia belangeri ENSTBEG00000005874 N 0.553
ENSCJAG00000014197 Callithrix jacchus ENSCJAG00000014197 N 0.553
hmgb1b Gasterosteus aculeatus ENSGACG00000011447 N 0.552
ENSBTAG00000031711 Bos taurus ENSBTAG00000031711 N 0.551
ENSSTOG00000007009 Ictidomys tridecemlineatus ENSSTOG00000007009 N 0.551
ENSOARG00000005357 Ovis aries ENSOARG00000005357 N 0.551
ENSMMUG00000019832 Macaca mulatta ENSMMUG00000019832 N 0.551
ENSOGAG00000028007 Otolemur garnettii ENSOGAG00000028007 N 0.547
hmgb1a Oryzias latipes ENSORLG00000003400 N 0.546
ENSOGAG00000030052 Otolemur garnettii ENSOGAG00000030052 N 0.545
ENSCSAG00000015385 Chlorocebus sabaeus ENSCSAG00000015385 N 0.545
ENSTBEG00000015340 Tupaia belangeri ENSTBEG00000015340 N 0.545
ENSMEUG00000011289 Macropus eugenii ENSMEUG00000011289 N 0.542
ENSSTOG00000012404 Ictidomys tridecemlineatus ENSSTOG00000012404 N 0.541
ENSBTAG00000020685 Bos taurus ENSBTAG00000020685 N 0.539
ENSPANG00000010595 Papio anubis ENSPANG00000010595 N 0.538
HMGB3 Oryctolagus cuniculus ENSOCUG00000024959 N 0.536
ENSOGAG00000010941 Otolemur garnettii ENSOGAG00000010941 N 0.534
ENSGGOG00000025769 Gorilla gorilla ENSGGOG00000025769 N 0.529
ENSONIG00000019935 Oreochromis niloticus ENSONIG00000019935 N 0.528
ENSAMEG00000011652 Ailuropoda melanoleuca ENSAMEG00000011652 N 0.527
ENSPPYG00000020229 Pongo abelii ENSPPYG00000020229 N 0.526
ENSOGAG00000032325 Otolemur garnettii ENSOGAG00000032325 N 0.525
AABR07060165.1 Rattus norvegicus ENSRNOG00000048544 N 0.525
ENSOCUG00000016030 Oryctolagus cuniculus ENSOCUG00000016030 N 0.525
AAI68534 Xenopus tropicalis AAI68534 N 0.524
ENSGMOG00000010060 Gadus morhua ENSGMOG00000010060 N 0.524
hmgb2b Gasterosteus aculeatus ENSGACG00000001173 N 0.523
ENSTSYG00000012587 Tarsius syrichta ENSTSYG00000012587 N 0.523
ENSMMUG00000007761 Macaca mulatta ENSMMUG00000007761 N 0.520
ENSMMUP00000010196 Macaca fascicularis ENSMMUP00000010196 N 0.520
ENSDNOG00000041663 Dasypus novemcinctus ENSDNOG00000041663 N 0.519
ENSCJAG00000017053 Callithrix jacchus ENSCJAG00000017053 N 0.517
ENSCJAG00000007095 Callithrix jacchus ENSCJAG00000007095 N 0.517
Myotis_brandtii_HMGB3_10026974 Myotis brandtii Myotis_brandtii_HMGB3_10026974 N 0.516
ENSOGAG00000031959 Otolemur garnettii ENSOGAG00000031959 N 0.514
ENSXMAG00000011106 Xiphophorus maculatus ENSXMAG00000011106 N 0.514
ENSPFOG00000004794 Poecilia formosa ENSPFOG00000004794 N 0.514
hmgb2b Oryzias latipes ENSORLG00000018687 N 0.514
hmgb2b Takifugu rubripes ENSTRUG00000005015 N 0.514
hmgb2b Tetraodon nigroviridis ENSTNIG00000004824 N 0.514
ENSTBEG00000015758 Tupaia belangeri ENSTBEG00000015758 N 0.511
ENSCJAG00000007419 Callithrix jacchus ENSCJAG00000007419 N 0.508
ENSMPUG00000020113 Mustela putorius furo ENSMPUG00000020113 N 0.507
ENSAMXG00000014031 Astyanax mexicanus ENSAMXG00000014031 N 0.506
ENSMEUG00000016024 Macropus eugenii ENSMEUG00000016024 N 0.504
ENSTBEG00000013375 Tupaia belangeri ENSTBEG00000013375 N 0.502
ENSPANG00000023341 Papio anubis ENSPANG00000023341 N 0.500
ENSMMUG00000010106 Macaca mulatta ENSMMUG00000010106 I 0.499
ENSOGAG00000029272 Otolemur garnettii ENSOGAG00000029272 N 0.499
ENSCJAG00000004401 Callithrix jacchus ENSCJAG00000004401 N 0.499
ENSOGAG00000027183 Otolemur garnettii ENSOGAG00000027183 N 0.497
AAH44009 Xenopus laevis AAH44009 N 0.494
ENSPMAG00000007397 Petromyzon marinus ENSPMAG00000007397 N 0.493
ENSGGOG00000023265 Gorilla gorilla ENSGGOG00000023265 N 0.493
hmgb3b Danio rerio ENSDARG00000006408 N 0.492
ENSOGAG00000024497 Otolemur garnettii ENSOGAG00000024497 N 0.492
ENSLAFG00000030388 Loxodonta africana ENSLAFG00000030388 N 0.491
ENSPANG00000025478 Papio anubis ENSPANG00000025478 N 0.490
ENSCJAG00000011146 Callithrix jacchus ENSCJAG00000011146 N 0.490
ENSCJAG00000005187 Callithrix jacchus ENSCJAG00000005187 I 0.490
ENSCJAG00000007594 Callithrix jacchus ENSCJAG00000007594 N 0.489
ENSBTAG00000005098 Bos taurus ENSBTAG00000005098 N 0.488
ENSCSAG00000010707 Chlorocebus sabaeus ENSCSAG00000010707 N 0.488
ENSBTAP00000049034-D1 Bos grunniens ENSBTAP00000049034-D1 N 0.488
HMGB1 Gorilla gorilla ENSGGOG00000026606 N 0.480
ENSOGAG00000033550 Otolemur garnettii ENSOGAG00000033550 N 0.479
ENSBTAP00000052990-D1 Bos grunniens ENSBTAP00000052990-D1 N 0.475
ENSBTAG00000015315 Bos taurus ENSBTAG00000015315 N 0.475
HelroG157726 Helobdella robusta HelroG157726 N 0.474
ENSDNOG00000042649 Dasypus novemcinctus ENSDNOG00000042649 N 0.473
ENSOARG00000019147 Ovis aries ENSOARG00000019147 N 0.472
CapteG158220 Capitella teleta CapteG158220 N 0.472
SMAR013695 Strigamia maritima SMAR013695 N 0.470
ENSGGOG00000026945 Gorilla gorilla ENSGGOG00000026945 N 0.470
ENSPANG00000020000 Papio anubis ENSPANG00000020000 N 0.469
HelroG157878 Helobdella robusta HelroG157878 N 0.468
ENSOGAG00000033253 Otolemur garnettii ENSOGAG00000033253 N 0.468
ENSOGAG00000006589 Otolemur garnettii ENSOGAG00000006589 N 0.466
ENSTBEG00000005706 Tupaia belangeri ENSTBEG00000005706 N 0.465
ENSCSAVG00000000341 Ciona savignyi ENSCSAVG00000000341 N 0.464
ENSCJAG00000033913 Callithrix jacchus ENSCJAG00000033913 N 0.458
Sakowv30042012m.g Saccoglossus kowalevskii Sakowv30042012m.g N 0.457
ENSMMUG00000018606 Macaca mulatta ENSMMUG00000018606 N 0.456
ENSMEUG00000009480 Macropus eugenii ENSMEUG00000009480 N 0.453
ENSOGAG00000033658 Otolemur garnettii ENSOGAG00000033658 N 0.452
hmg1/2 Ciona intestinalis ENSCING00000004075 N 0.451
ENSCSAG00000001500 Chlorocebus sabaeus ENSCSAG00000001500 N 0.446
ENSGGOG00000027139 Gorilla gorilla ENSGGOG00000027139 N 0.442
ENSCJAG00000003900 Callithrix jacchus ENSCJAG00000003900 N 0.440
MCOS_0000526101 Mesocestoides corti MCOS_0000526101 N 0.440
ENSETEG00000013458 Echinops telfairi ENSETEG00000013458 N 0.439
TsM_000115400 Taenia solium TsM_000115400 N 0.437
EmuJ_001049000 Echinococcus multilocularis EmuJ_001049000 N 0.437
ENSDORG00000004753 Dipodomys ordii ENSDORG00000004753 N 0.436
ENSDNOG00000035552 Dasypus novemcinctus ENSDNOG00000035552 N 0.436
ENSDNOG00000033430 Dasypus novemcinctus ENSDNOG00000033430 N 0.435
tetur02g08260 Tetranychus urticae tetur02g08260 N 0.433
tetur02g08340 Tetranychus urticae tetur02g08340 N 0.433
ENSBTAP00000049357-D3 Bos grunniens ENSBTAP00000049357-D3 N 0.432
ENSMICG00000000573 Microcebus murinus ENSMICG00000000573 N 0.432
LotgiG200052 Lottia gigantea LotgiG200052 N 0.431
PXEA_0002175501 Protopolystoma xenopodis PXEA_0002175501 N 0.428
ISCW017350 Ixodes scapularis ISCW017350 N 0.428
ACYPI007949 Acyrthosiphon pisum ACYPI007949 N 0.426
ENSOGAG00000007401 Otolemur garnettii ENSOGAG00000007401 N 0.425
SMU15027649 Schmidtea mediterranea SMU15027649 N 0.424
ENSMPUG00000000121 Mustela putorius furo ENSMPUG00000000121 N 0.422
AABR07060287.1 Rattus norvegicus ENSRNOG00000049746 N 0.421
ENSETEG00000009246 Echinops telfairi ENSETEG00000009246 N 0.421
ENSOARG00000002938 Ovis aries ENSOARG00000002938 N 0.421
HNAJ_0001249801 Hymenolepis nana HNAJ_0001249801 N 0.420
HmN_000466000 Hymenolepis microstoma HmN_000466000 N 0.420
HDID_0000237901 Hymenolepis diminuta HDID_0000237901 N 0.420
ENSCSAG00000012719 Chlorocebus sabaeus ENSCSAG00000012719 N 0.419
NV15664 Nasonia vitripennis NV15664 N 0.417