hmg20a (Tetraodon nigroviridis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSTNIG00000008460 T329257_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Hmg20b
M02487_2.00
Mus musculus
NNATTATWHWN

NWDWATAATNN
PBM
Weirauch et al.(2014)
pTH8555
0.595 0.710
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000011296 Sox 45 113

Links

Other Sox family TFs
Other Tetraodon nigroviridis TFs

177 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMXG00000013048 Astyanax mexicanus ENSAMXG00000013048 I 0.741
ENSONIG00000012862 Oreochromis niloticus ENSONIG00000012862 I 0.741
hmg20a Oryzias latipes ENSORLG00000001794 I 0.741
hmg20a Takifugu rubripes ENSTRUG00000016127 I 0.741
ENSXMAG00000000587 Xiphophorus maculatus ENSXMAG00000000587 I 0.741
hmg20a Gasterosteus aculeatus ENSGACG00000003466 I 0.741
ENSPFOG00000014087 Poecilia formosa ENSPFOG00000014087 I 0.741
ENSGMOG00000015452 Gadus morhua ENSGMOG00000015452 I 0.737
ENSLOCG00000014255 Lepisosteus oculatus ENSLOCG00000014255 I 0.712
hmg20a Danio rerio ENSDARG00000031198 I 0.705
ENSLACG00000004599 Latimeria chalumnae ENSLACG00000004599 I 0.704
hmg20a.L Xenopus laevis XB-GENE-955359 I 0.671
hmg20a Xenopus tropicalis XB-GENE-955353 I 0.671
TriadG23407 Trichoplax adhaerens TriadG23407 I 0.647
estExt_fgenesh2_pg.C_2300014 Branchiostoma floridae estExt_fgenesh2_pg.C_2300014 I 0.644
estExt_fgenesh2_pg.C_2300011 Branchiostoma floridae estExt_fgenesh2_pg.C_2300011 I 0.644
ENSFALG00000010751 Ficedula albicollis ENSFALG00000010751 I 0.639
ENSGALG00000002746 Gallus gallus ENSGALG00000002746 I 0.639
HMG20A Taeniopygia guttata ENSTGUG00000003690 I 0.639
Afo_R007008 Aptenodytes forsteri Afo_R007008 I 0.639
Aan_R011791 Calypte anna Aan_R011791 I 0.639
HMG20A Meleagris gallopavo ENSMGAG00000003179 I 0.639
Pvit_01997 Pogona vitticeps Pvit_01997 I 0.639
Brh_R011859 Buceros rhinoceros Brh_R011859 I 0.639
Alligator_sinensis_CCG010545.1 Alligator sinensis Alligator_sinensis_CCG010545.1 I 0.639
Tal_R006697 Tyto alba Tal_R006697 I 0.639
ENSAPLG00000015603 Anas platyrhynchos ENSAPLG00000015603 I 0.639
HMG20A Anolis carolinensis ENSACAG00000011520 I 0.639
HMG20A Ornithorhynchus anatinus ENSOANG00000009993 I 0.631
ENSNLEG00000008357 Nomascus leucogenys ENSNLEG00000008357 I 0.631
ENSOARG00000001765 Ovis aries ENSOARG00000001765 I 0.631
HMG20A Myotis lucifugus ENSMLUG00000011648 I 0.631
HMG20A Microcebus murinus ENSMICG00000011025 I 0.631
ENSMEUG00000016429 Macropus eugenii ENSMEUG00000016429 I 0.631
HMG20A Oryctolagus cuniculus ENSOCUG00000005648 I 0.631
HMG20A Macaca mulatta ENSMMUG00000007430 I 0.631
ENSMPUG00000017330 Mustela putorius furo ENSMPUG00000017330 I 0.631
HMG20A Monodelphis domestica ENSMODG00000012113 I 0.631
Hmg20a Mus musculus ENSMUSG00000032329 I 0.631
HMG20A Sus scrofa ENSSSCG00000001871 I 0.631
HMG20A Tursiops truncatus ENSTTRG00000006500 I 0.631
ENSTSYG00000003485 Tarsius syrichta ENSTSYG00000003485 I 0.631
HMG20A Vicugna pacos ENSVPAG00000010013 I 0.631
ENSP00000336856-D1 Bos grunniens ENSP00000336856-D1 I 0.631
Myotis_brandtii_HMG20A_10005450 Myotis brandtii Myotis_brandtii_HMG20A_10005450 I 0.631
ENSP00000371133 Macaca fascicularis ENSP00000371133 I 0.631
HMG20A Tupaia belangeri ENSTBEG00000015283 I 0.631
ENSSTOG00000013818 Ictidomys tridecemlineatus ENSSTOG00000013818 I 0.631
ENSPPYG00000006683 Pongo abelii ENSPPYG00000006683 I 0.631
ENSPANG00000015844 Papio anubis ENSPANG00000015844 I 0.631
HMG20A Pan troglodytes ENSPTRG00000007326 I 0.631
Hmg20a Rattus norvegicus ENSRNOG00000016905 I 0.631
ENSSSCG00000024002 Sus scrofa ENSSSCG00000024002 I 0.631
ENSSHAG00000012311 Sarcophilus harrisii ENSSHAG00000012311 I 0.631
HMG20A Otolemur garnettii ENSOGAG00000006630 I 0.631
HMG20A Procavia capensis ENSPCAG00000013879 I 0.631
HMG20A Felis catus ENSFCAG00000022539 I 0.631
HMG20A Bos taurus ENSBTAG00000020441 I 0.631
ENSCSAG00000014734 Chlorocebus sabaeus ENSCSAG00000014734 I 0.631
HMG20A Homo sapiens ENSG00000140382 I 0.631
ENSAMEG00000008348 Ailuropoda melanoleuca ENSAMEG00000008348 I 0.631
Hmg20a Dipodomys ordii ENSDORG00000000623 I 0.631
HMG20A Canis familiaris ENSCAFG00000018061 I 0.631
HMG20A Choloepus hoffmanni ENSCHOG00000012116 I 0.631
HMG20A Erinaceus europaeus ENSEEUG00000004472 I 0.631
HMG20A Callithrix jacchus ENSCJAG00000011131 I 0.631
HMG20A Echinops telfairi ENSETEG00000015812 I 0.631
HMG20A Gorilla gorilla ENSGGOG00000008439 I 0.631
HMG20A Dasypus novemcinctus ENSDNOG00000034143 I 0.631
HMG20A Cavia porcellus ENSCPOG00000011704 I 0.631
HMG20A Loxodonta africana ENSLAFG00000018273 I 0.631
Sakowv30033800m.g Saccoglossus kowalevskii Sakowv30033800m.g I 0.626
NEMVEDRAFT_v1g105457 Nematostella vectensis NEMVEDRAFT_v1g105457 I 0.626
Gfo_R004366 Geospiza fortis Gfo_R004366 I 0.608
ENSPSIG00000013006 Pelodiscus sinensis ENSPSIG00000013006 I 0.607
Cmyd_10010094 Chelonia mydas Cmyd_10010094 I 0.607
HMG20B Callithrix jacchus ENSCJAG00000003488 I 0.604
hmg20b Danio rerio ENSDARG00000042045 I 0.604
ENSAMXG00000017986 Astyanax mexicanus ENSAMXG00000017986 I 0.604
hmg20b.S Xenopus laevis XB-GENE-17338323 I 0.602
hmg20b.L Xenopus laevis XB-GENE-5809135 I 0.602
hmg20b Xenopus tropicalis XB-GENE-5809048 I 0.602
ENSGMOG00000011717 Gadus morhua ENSGMOG00000011717 I 0.601
ENSOARG00000005838 Ovis aries ENSOARG00000005838 I 0.597
ENSSTOG00000022314 Ictidomys tridecemlineatus ENSSTOG00000022314 I 0.595
HMG20B Taeniopygia guttata ENSTGUG00000000169 I 0.595
HMG20B Cavia porcellus ENSCPOG00000010777 I 0.595
ENSCSAG00000011140 Chlorocebus sabaeus ENSCSAG00000011140 I 0.595
Afo_R007636 Aptenodytes forsteri Afo_R007636 I 0.595
Gfo_R007604 Geospiza fortis Gfo_R007604 I 0.595
ENSAMEG00000005678 Ailuropoda melanoleuca ENSAMEG00000005678 I 0.595
Myotis_brandtii_HMG20B_10016321 Myotis brandtii Myotis_brandtii_HMG20B_10016321 I 0.595
Pvit_08123 Pogona vitticeps Pvit_08123 I 0.595
Cmyd_10002377 Chelonia mydas Cmyd_10002377 I 0.595
ENSAPLG00000005528 Anas platyrhynchos ENSAPLG00000005528 I 0.595
ENSMEUG00000001270 Macropus eugenii ENSMEUG00000001270 I 0.595
Aan_R011684 Calypte anna Aan_R011684 I 0.595
ENSBTAG00000047668 Bos taurus ENSBTAG00000047668 I 0.595
Alligator_sinensis_CCG000441.1 Alligator sinensis Alligator_sinensis_CCG000441.1 I 0.595
HMG20B Tursiops truncatus ENSTTRG00000008832 I 0.595
HMG20B Canis familiaris ENSCAFG00000019215 I 0.595
HMG20B Ornithorhynchus anatinus ENSOANG00000013515 I 0.595
ENSPANG00000010575 Papio anubis ENSPANG00000010575 I 0.595
HMG20B Procavia capensis ENSPCAG00000010772 I 0.595
HMG20B Gallus gallus ENSGALG00000027838 I 0.595
HMG20B Homo sapiens ENSG00000064961 I 0.595
ENSOARG00000012318 Ovis aries ENSOARG00000012318 I 0.595
ENSFALG00000011609 Ficedula albicollis ENSFALG00000011609 I 0.595
HMG20B Otolemur garnettii ENSOGAG00000014171 I 0.595
HMG20B Felis catus ENSFCAG00000026167 I 0.595
ENSMPUG00000003925 Mustela putorius furo ENSMPUG00000003925 I 0.595
Hmg20b Mus musculus ENSMUSG00000020232 D 0.595
Hmg20b Rattus norvegicus ENSRNOG00000020601 I 0.595
HMG20B Loxodonta africana ENSLAFG00000007845 I 0.595
HMG20B Meleagris gallopavo ENSMGAG00000001362 I 0.595
ENSSHAG00000007226 Sarcophilus harrisii ENSSHAG00000007226 I 0.595
HMG20B Myotis lucifugus ENSMLUG00000022392 I 0.595
ENSPSIG00000010923 Pelodiscus sinensis ENSPSIG00000010923 I 0.595
HMG20B Gorilla gorilla ENSGGOG00000014805 I 0.595
HMG20B Monodelphis domestica ENSMODG00000006884 I 0.595
ENSPPYG00000009378 Pongo abelii ENSPPYG00000009378 I 0.595
NEMVEDRAFT_v1g87244 Nematostella vectensis NEMVEDRAFT_v1g87244 I 0.594
hmg20b Gasterosteus aculeatus ENSGACG00000012785 I 0.593
hmg20b Oryzias latipes ENSORLG00000004640 I 0.593
ENSONIG00000004838 Oreochromis niloticus ENSONIG00000004838 I 0.593
eef2l2 Takifugu rubripes ENSTRUG00000017921 I 0.593
hmg20b Tetraodon nigroviridis ENSTNIG00000010630 I 0.593
ENSXMAG00000012647 Xiphophorus maculatus ENSXMAG00000012647 I 0.593
ENSPFOG00000003017 Poecilia formosa ENSPFOG00000003017 I 0.593
HMG20A Sorex araneus ENSSARG00000012609 I 0.590
ENSDORG00000012598 Dipodomys ordii ENSDORG00000012598 I 0.588
ENSAMEG00000010946 Ailuropoda melanoleuca ENSAMEG00000010946 I 0.567
SPU_004776 Strongylocentrotus purpuratus SPU_004776 I 0.565
SPU_018371 Strongylocentrotus purpuratus SPU_018371 I 0.565
ENSLACG00000010699 Latimeria chalumnae ENSLACG00000010699 I 0.554
ENSCPOG00000020879 Cavia porcellus ENSCPOG00000020879 I 0.553
ENSLOCG00000010117 Lepisosteus oculatus ENSLOCG00000010117 I 0.551
CapteG155070 Capitella teleta CapteG155070 I 0.550
L798_15457 Zootermopsis nevadensis L798_15457 I 0.550
Ocbimv22031259m.g Octopus bimaculoides Ocbimv22031259m.g I 0.543
LotgiG196090 Lottia gigantea LotgiG196090 I 0.537
SMAR000790 Strigamia maritima SMAR000790 I 0.530
NV11068 Nasonia vitripennis NV11068 I 0.528
HHAL010521-PA Halyomorpha halys HHAL010521-PA I 0.522
CLEC002862 Cimex lectularius CLEC002862 I 0.520
XP_002161760.1 Hydra magnipapillata XP_002161760.1 I 0.517
XP_002158984.1 Hydra magnipapillata XP_002158984.1 I 0.517
Hsal_13222--XP_625193.1_APIME Harpegnathos saltator Hsal_13222--XP_625193.1_APIME I 0.496
GB41600 Apis mellifera GB41600 I 0.496
SMAR002604 Strigamia maritima SMAR002604 I 0.490
estExt_fgenesh2_pg.C_1350020 Branchiostoma floridae estExt_fgenesh2_pg.C_1350020 I 0.489
estExt_fgenesh2_pg.C_4800003 Branchiostoma floridae estExt_fgenesh2_pg.C_4800003 I 0.489
RPRC008043 Rhodnius prolixus RPRC008043 I 0.485
CapteG191691 Capitella teleta CapteG191691 I 0.465
YQE_04289 Dendroctonus ponderosae YQE_04289 N 0.462
ENSMMUP00000031974 Macaca fascicularis ENSMMUP00000031974 I 0.456
ENSMMUG00000028932 Macaca mulatta ENSMMUG00000028932 I 0.456
ACYPI002322 Acyrthosiphon pisum ACYPI002322 I 0.455
MCINX003064 Melitaea cinxia MCINX003064 I 0.453
TC011144 Tribolium castaneum TC011144 N 0.448
LDEC005234 Leptinotarsa decemlineata LDEC005234 N 0.446
Sakowv30005216m.g Saccoglossus kowalevskii Sakowv30005216m.g I 0.445
HMG20A Ochotona princeps ENSOPRG00000011000 I 0.444
TC009230 Tribolium castaneum TC009230 N 0.443
HMEL017569 Heliconius melpomene HMEL017569 I 0.439
BGIBMGA005325 Bombyx mori BGIBMGA005325 I 0.434
ACEP22292 Atta cephalotes ACEP22292 N 0.428
Cflo_07151--XP_625193.1_APIME Camponotus floridanus Cflo_07151--XP_625193.1_APIME N 0.426
ENSCSAVG00000001086 Ciona savignyi ENSCSAVG00000001086 N 0.425
Cmyd_10009674 Chelonia mydas Cmyd_10009674 I 0.423
SINV20852 Solenopsis invicta SINV20852 N 0.422
ACYPI001201 Acyrthosiphon pisum ACYPI001201 N 0.419
LDEC010438 Leptinotarsa decemlineata LDEC010438 I 0.419
HelroG189739 Helobdella robusta HelroG189739 N 0.419
ACYPI34316 Acyrthosiphon pisum ACYPI34316 N 0.419
ENSCING00000018888 Ciona intestinalis ENSCING00000018888 N 0.418
HMG20B Pteropus vampyrus ENSPVAG00000004300 I 0.415