F775_30706 (Aegilops tauschii)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 F775_30706 T329499_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY

RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.440 0.565
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EMT15409 Sox 34 103

Links

Other Sox family TFs
Other Aegilops tauschii TFs

216 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Traes_6DL_E5B5F44FC Triticum aestivum Traes_6DL_E5B5F44FC I 0.741
TRIUR3_34670 Triticum urartu TRIUR3_34670 I 0.741
Traes_6BL_017F7FCF8 Triticum aestivum Traes_6BL_017F7FCF8 I 0.741
Traes_6AL_9EC9874F1 Triticum aestivum Traes_6AL_9EC9874F1 I 0.741
Pavir.J40489 Panicum virgatum Pavir.J40489 N 0.685
Pavir.J38684 Panicum virgatum Pavir.J38684 N 0.685
BRADI3G51140 Brachypodium distachyon BRADI3G51140 N 0.676
OS02G0670400 Oryza sativa OS02G0670400 N 0.672
OPUNC02G25020 Oryza punctata OPUNC02G25020 N 0.672
ONIVA02G29880 Oryza nivara ONIVA02G29880 N 0.672
MLOC_57633 Hordeum vulgare MLOC_57633 I 0.672
OB02G34710 Oryza brachyantha OB02G34710 N 0.672
OBART02G27340 Oryza barthii OBART02G27340 N 0.672
OGLUM02G27900 Oryza glumaepatula OGLUM02G27900 N 0.672
OMERI02G26620 Oryza meridionalis OMERI02G26620 N 0.672
ORUFI02G28820 Oryza rufipogon ORUFI02G28820 N 0.672
BGIOSGA008782 Oryza indica BGIOSGA008782 N 0.672
LPERR02G22240 Leersia perrieri LPERR02G22240 N 0.659
GRMZM2G013821 Zea mays GRMZM2G013821 N 0.659
Si018635m.g Setaria italica Si018635m.g N 0.657
Sb04g032180 Sorghum bicolor Sb04g032180 N 0.626
GRMZM2G156785 Zea mays GRMZM2G156785 N 0.595
GSMUA_Achr5G11630_001 Musa acuminata GSMUA_Achr5G11630_001 I 0.574
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.539
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.523
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.517
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.512
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.511
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.511
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.507
Cla018386 Citrullus lanatus Cla018386 I 0.507
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.507
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.506
TCM_021706 Theobroma cacao TCM_021706 I 0.501
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.500
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.500
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.500
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.500
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.500
OB06G35870 Oryza brachyantha OB06G35870 I 0.500
F775_27510 Aegilops tauschii F775_27510 I 0.500
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.499
Cla023817 Citrullus lanatus Cla023817 I 0.499
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.499
PK29786.1 Cannabis sativa PK29786.1 I 0.499
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.496
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.496
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.496
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.496
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.493
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.493
OS06G0728000 Oryza sativa OS06G0728000 I 0.493
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.493
Si007288m.g Setaria italica Si007288m.g I 0.493
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.493
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.493
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.493
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.493
OBART06G28090 Oryza barthii OBART06G28090 I 0.493
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.493
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.493
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.493
PK11149.1 Cannabis sativa PK11149.1 I 0.489
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.488
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.486
Bra037266 Brassica rapa Bra037266 I 0.483
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.483
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.483
Pm002934 Prunus mume Pm002934 I 0.483
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.483
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.481
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.479
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.479
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.478
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.478
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.478
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.478
HMGB4 Arabidopsis thaliana AT2G17560 I 0.476
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.476
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.474
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.474
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.474
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.473
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.473
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.473
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.473
Ca_10725 Cicer arietinum Ca_10725 I 0.473
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.473
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.473
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.473
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.472
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.472
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.469
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.469
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.469
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.469
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.469
30170.m014386 Ricinus communis 30170.m014386 I 0.469
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.469
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.469
Cla009093 Citrullus lanatus Cla009093 I 0.469
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.469
Bra017723 Brassica rapa Bra017723 I 0.468
Bra011624 Brassica rapa Bra011624 I 0.468
Bo7g117500 Brassica oleracea Bo7g117500 I 0.468
Bo1g006360 Brassica oleracea Bo1g006360 I 0.468
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.468
Ca_19340 Cicer arietinum Ca_19340 I 0.467
mgf016363m Mimulus guttatus mgf016363m I 0.467
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.467
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.467
Ca_04825 Cicer arietinum Ca_04825 I 0.465
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.465
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.465
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.464
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.464
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.464
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.464
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.464
TCM_034406 Theobroma cacao TCM_034406 I 0.464
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.463
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.462
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.462
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.462
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.462
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.462
Bo5g030580 Brassica oleracea Bo5g030580 I 0.462
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.462
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.462
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.462
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.462
HMGB2 Arabidopsis thaliana AT1G20693 I 0.462
MDP0000275042 Malus domestica MDP0000275042 I 0.457
Bo7g014280 Brassica oleracea Bo7g014280 I 0.457
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.457
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.457
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.454
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.454
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.452
Pm018913 Prunus mume Pm018913 I 0.452
MDP0000362980 Malus domestica MDP0000362980 I 0.452
TCM_000068 Theobroma cacao TCM_000068 I 0.452
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.452
MDP0000757111 Malus domestica MDP0000757111 I 0.452
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.452
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.452
29669.m000844 Ricinus communis 29669.m000844 I 0.450
SNAPOd2T00000370001 Oikopleura dioica SNAPOd2T00000370001 N 0.450
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.449
Bra002073 Brassica rapa Bra002073 I 0.449
29701.m000600 Ricinus communis 29701.m000600 I 0.449
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.448
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.448
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.446
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.446
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.446
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.444
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.442
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.442
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.442
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.442
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.442
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.442
Bo8g070350 Brassica oleracea Bo8g070350 I 0.441
Bo7g061420 Brassica oleracea Bo7g061420 I 0.441
HMG-1 Pisum sativum Q41026_PEA D 0.440
Pm026798 Prunus mume Pm026798 I 0.440
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.439
TCM_042534 Theobroma cacao TCM_042534 I 0.439
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.438
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.438
HMGB1 Arabidopsis thaliana AT3G51880 I 0.438
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.438
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.438
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.438
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.437
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.436
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.436
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.436
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.436
OLONG_000335 Oryza longistaminata OLONG_000335 N 0.436
Si031512m.g Setaria italica Si031512m.g I 0.436
Bo7g101270 Brassica oleracea Bo7g101270 I 0.434
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.434
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.434
Bra025838 Brassica rapa Bra025838 I 0.434
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.433
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.433
HMGB3 Arabidopsis thaliana AT1G20696 I 0.433
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.433
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.433
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.433
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.433
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.433
Bo8g081200 Brassica oleracea Bo8g081200 I 0.432
mgf009330m Mimulus guttatus mgf009330m I 0.431
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.430
Cagra.2350s0098 Capsella grandiflora Cagra.2350s0098 I 0.430
Carubv10005973m.g Capsella rubella Carubv10005973m.g I 0.430
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.429
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.429
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.429
MDP0000607529 Malus domestica MDP0000607529 I 0.427
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.426
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.425
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.425
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.425
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.425
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.424
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.423
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.423
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.423
PMAA_044390 Penicillium marneffei PMAA_044390 N 0.420
PMAA_044390 Talaromyces marneffei PMAA_044390 N 0.420
Ca_09896 Cicer arietinum Ca_09896 I 0.416
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.416