fgenesh2_kg.4__1466__AT2G34450.2 (Arabidopsis lyrata)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 fgenesh2_kg.4__1466__AT2G34450.2 T329859_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.4__1466__AT2G34450.2 Sox 64 134

Links

Other Sox family TFs
Other Arabidopsis lyrata TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.741
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.707
Bo4g182600 Brassica oleracea Bo4g182600 N 0.680
Bra021911 Brassica rapa Bra021911 N 0.680
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.639
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.639
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.639
Ca_05164 Cicer arietinum Ca_05164 N 0.597
Ca_05162 Cicer arietinum Ca_05162 N 0.597
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.586
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.581
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.579
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.574
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.574
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.574
TCM_029514 Theobroma cacao TCM_029514 N 0.574
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.572
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.571
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.569
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.569
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.568
29693.m002035 Ricinus communis 29693.m002035 N 0.566
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.564
PK22924.1 Cannabis sativa PK22924.1 N 0.562
MDP0000695104 Malus domestica MDP0000695104 N 0.560
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.560
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.556
MDP0000143506 Malus domestica MDP0000143506 N 0.551
Si003021m.g Setaria italica Si003021m.g N 0.547
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.546
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.541
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.540
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.534
F775_05073 Aegilops tauschii F775_05073 I 0.530
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.530
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.529
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.529
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.522
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.522
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.521
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.517
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.514
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.512
mgf009922m Mimulus guttatus mgf009922m N 0.494
OB01G34910 Oryza brachyantha OB01G34910 I 0.429
MDP0000170945 Malus domestica MDP0000170945 N 0.424
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.419
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.419
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.419
OBART01G25720 Oryza barthii OBART01G25720 N 0.419
OS01G0666200 Oryza sativa OS01G0666200 N 0.419
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.419
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.419
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.416