fgenesh2_kg.6__1935__AT5G23420.1 (Arabidopsis lyrata)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 fgenesh2_kg.6__1935__AT5G23420.1 T329861_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.6__1935__AT5G23420.1 Sox 112 177

Links

Other Sox family TFs
Other Arabidopsis lyrata TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HMGB7 Arabidopsis thaliana AT5G23420 N 0.601
scaffold_602413.1 Arabidopsis lyrata scaffold_602413.1 N 0.601
Bo2g160920 Brassica oleracea Bo2g160920 I 0.556
Bra029371 Brassica rapa Bra029371 I 0.556
OB08G10120 Oryza brachyantha OB08G10120 N 0.542
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.538
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.538
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.523
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.523
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.523
OS08G0101100 Oryza sativa OS08G0101100 I 0.523
Pm006054 Prunus mume Pm006054 I 0.523
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.523
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.523
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.523
OBART08G00070 Oryza barthii OBART08G00070 I 0.523
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.523
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.523
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.512
MDP0000205665 Malus domestica MDP0000205665 I 0.504
Bo9g014140 Brassica oleracea Bo9g014140 I 0.499
Bra026498 Brassica rapa Bra026498 I 0.499
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.492
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.488
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.488
30131.m007272 Ricinus communis 30131.m007272 I 0.486
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.477
Cla009222 Citrullus lanatus Cla009222 I 0.477
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.476
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.476
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.474
mgf009124m Mimulus guttatus mgf009124m N 0.467
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.465
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.465
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.461
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.449
PK03866.1 Cannabis sativa PK03866.1 I 0.446
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.438
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.435
Si014434m.g Setaria italica Si014434m.g N 0.433
LPERR08G00140 Leersia perrieri LPERR08G00140 N 0.432
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.432
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.431
TCM_007659 Theobroma cacao TCM_007659 I 0.431
ENSOGAG00000034481 Otolemur garnettii ENSOGAG00000034481 N 0.424
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.420
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.417