fgenesh2_kg.6__3081__AT4G11080.1 (Arabidopsis lyrata)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 fgenesh2_kg.6__3081__AT4G11080.1 T329862_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB13
M07268_2.00
Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB

VYGGCGGHGRHDNNNVNRDND
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a
0.706 0.917
HMGB13
M07269_2.00
Arabidopsis thaliana
GGHGGHGGYGGHGGN

NCCDCCRCCDCCDCC
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a
0.706 0.917
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.6__3081__AT4G11080.1 Sox 131 198
fgenesh2_kg.6__3081__AT4G11080.1 Sox 248 314
fgenesh2_kg.6__3081__AT4G11080.1 Sox 374 442

Links

Other Sox family TFs
Other Arabidopsis lyrata TFs

Invalid Input OrderBy

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action