CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GLOINDRAFT_44351
(
Rhizophagus irregularis
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
GLOINDRAFT_44351
T330171_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ste11
M11342_2.00
Schizosaccharomyces pombe
DWNTTTCTTTGTTHNHWW
WWDNDAACAAAGAAANWH
Transfac
Matys et al.(2006)
F$STE11_01
0.453
0.309
ste11
M11343_2.00
Schizosaccharomyces pombe
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$STE11_02
0.453
0.309
ROX1
M00070_2.00
Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN
PBM
Badis et al.(2008)
ROX1_2099
0.426
0.353
ROX1
M07498_2.00
Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1
0.426
0.353
ROX1
M08607_2.00
Saccharomyces cerevisiae
BYATTGTN
NACAATRV
Misc
DeBoer et al.(2011)
YPR065W_1396
0.426
0.353
ROX1
M11346_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6_01
0.426
0.353
ROX1
M11347_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6
0.426
0.353
fmf-1
M02491_2.00
Neurospora crassa
TCTTTGTY
RACAAAGA
PBM
Weirauch et al.(2014)
pTH8941
0.417
0.338
Sry
M00211_2.00
Mus musculus
ATTRTNNNNN
NNNNNAYAAT
PBM
Badis et al.(2009)
Sry_2833
0.417
0.279
Sry
M09408_2.00
Mus musculus
BWTTGTTWH
DWAACAAWV
Misc
Kulakovskiy et al.(2013)
SRY_MOUSE.H11MO.0.B
0.417
0.279
Sox14
M03971_2.00
Drosophila melanogaster
BTGTWCGGTR
YACCGWACAV
SELEX
Nitta et al.(2015)
Sox14_1
0.415
0.309
Sox14
M03972_2.00
Drosophila melanogaster
VACAATDNCATTGTB
VACAATGNHATTGTB
SELEX
Nitta et al.(2015)
Sox14_2
0.415
0.309
Sox14
M06449_2.00
Drosophila melanogaster
VYYCTTTGTYC
GRACAAAGRRB
B1H
Zhu et al.(2011)
Sox14_SANGER_10_FBgn0005612
0.415
0.309
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ESA14413
Sox
6
73
PPRPPNGFLLCRKNVHQEAKRRGICNMRVISKVTGMLWRAATPDEKEEYEKLAIKVHNLHSQRYPGYK
Links
Other
Sox
family TFs
Other
Rhizophagus irregularis
TFs
264 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy