CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GLYMA01G28820
(
Glycine max
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
GLYMA01G28820
T330258_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY
RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.649
0.710
YAB1
M00890_2.00
Arabidopsis thaliana
AATAATWA
TWATTATT
PBM
Franco-Zorrilla et al.(2014)
YAB1
0.433
0.261
YAB5
M02486_2.00
Arabidopsis thaliana
NNNNHRN
NYDNNNN
PBM
Weirauch et al.(2014)
pTH7575
0.433
0.239
YAB5
M00889_2.00
Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN
PBM
Franco-Zorrilla et al.(2014)
YAB5
0.433
0.239
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLYMA01G28820.10
Sox
53
121
PKRPPSAFFVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAKAPYEAKAAKRKAEYEKLIKAYE
GLYMA01G28820.2
Sox
53
99
PKRPPSAFFVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAV
GLYMA01G28820.3
Sox
53
121
PKRPPSAFFVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAKAPYEAKAAKRKAEYEKLIKAYE
GLYMA01G28820.7
Sox
53
122
PKRPPSAFFVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYE
GLYMA01G28820.8
Sox
53
122
PKRPPSAFFVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYE
GLYMA01G28820.9
Sox
53
122
PKRPPSAFFVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYE
Links
Other
Sox
family TFs
Other
Glycine max
TFs
671 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy