CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GLYMA04G10125
(
Glycine max
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
GLYMA04G10125
T330267_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
INO
M02485_2.00
Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN
PBM
Weirauch et al.(2014)
pTH7516
0.652
0.783
YAB5
M02486_2.00
Arabidopsis thaliana
NNNNHRN
NYDNNNN
PBM
Weirauch et al.(2014)
pTH7575
0.555
0.763
YAB5
M00889_2.00
Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN
PBM
Franco-Zorrilla et al.(2014)
YAB5
0.555
0.763
YAB1
M00890_2.00
Arabidopsis thaliana
AATAATWA
TWATTATT
PBM
Franco-Zorrilla et al.(2014)
YAB1
0.555
0.737
CRC
M07266_2.00
Arabidopsis thaliana
TWATCATW
WATGATWA
Dap-seq
OMalley et al.(2016)
CRC_col_a
0.555
0.605
CRC
M07267_2.00
Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC
Dap-seq
OMalley et al.(2016)
CRC_colamp_a
0.555
0.605
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLYMA04G10125.1
Sox
120
165
RQRTPSAYNCFIKKEIKRLKAENPDMAHKEAFSTAAKNWANFPQTQ
GLYMA04G10125.2
Sox
119
164
RQRTPSAYNCFIKKEIKRLKAENPDMAHKEAFSTAAKNWANFPQTQ
GLYMA04G10125.3
Sox
120
157
RQRTPSAYNCFIKKEIKRLKAENPDMAHKEAFSTAAKN
Links
Other
Sox
family TFs
Other
Glycine max
TFs
540 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy