GLYMA05G37010 (Glycine max)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 GLYMA05G37010 T330272_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB13
M07268_2.00
Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB

VYGGCGGHGRHDNNNVNRDND
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a
0.415 0.629
HMGB13
M07269_2.00
Arabidopsis thaliana
GGHGGHGGYGGHGGN

NCCDCCRCCDCCDCC
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a
0.415 0.629
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA05G37010.1 Sox 149 217
GLYMA05G37010.1 Sox 265 331
GLYMA05G37010.1 Sox 391 459
GLYMA05G37010.2 Sox 149 217

Links

Other Sox family TFs
Other Glycine max TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.699
SapurV1A.3543s0020 Salix purpurea SapurV1A.3543s0020 N 0.669
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.568
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.557
TCM_016416 Theobroma cacao TCM_016416 I 0.549
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.545
Lus10023090.g Linum usitatissimum Lus10023090.g N 0.538
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.538
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.537
30190.m010807 Ricinus communis 30190.m010807 I 0.536
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.533
Cla011101 Citrullus lanatus Cla011101 I 0.533
Pm024077 Prunus mume Pm024077 I 0.525
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.525
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.522
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.503
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.502
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.491
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.482
MTR_8g099305 Medicago truncatula MTR_8g099305 I 0.479
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.478
AMTR_s00023p00232620 Amborella trichopoda AMTR_s00023p00232620 N 0.474
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.470
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.469
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.468
PK10992.1 Cannabis sativa PK10992.1 I 0.467
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.461
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.456
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.449
OB02G19930 Oryza brachyantha OB02G19930 N 0.449
HMGB6 Arabidopsis thaliana AT4G23800 I 0.446
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.445
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.445
mgf015439m Mimulus guttatus mgf015439m I 0.444
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.443
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.442
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.441
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.441
Ca_05811 Cicer arietinum Ca_05811 I 0.437
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.435
MDP0000268093 Malus domestica MDP0000268093 I 0.433
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.430
Bra013731 Brassica rapa Bra013731 I 0.430
Bo1g037180 Brassica oleracea Bo1g037180 I 0.430
GLYMA01G07470 Glycine max GLYMA01G07470 N 0.429
CLEC003860 Cimex lectularius CLEC003860 I 0.428
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.427
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.423
ssrp1a Danio rerio ENSDARG00000037397 I 0.422
GSMUA_Achr10G14500_001 Musa acuminata GSMUA_Achr10G14500_001 N 0.421
Si017040m.g Setaria italica Si017040m.g I 0.421
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.420
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.416
HMGB13 Arabidopsis thaliana AT4G11080 D 0.415