CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GLYMA05G37010
(
Glycine max
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
GLYMA05G37010
T330272_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMGB13
M07268_2.00
Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a
0.415
0.629
HMGB13
M07269_2.00
Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a
0.415
0.629
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLYMA05G37010.1
Sox
149
217
KKRPSPPYILWMKDQWNEIKKANSEAEFKEISTMLGSKWKTVTAEEKKPYEEIYHAEKEAYLQMIAKEK
GLYMA05G37010.1
Sox
265
331
PKHPMSAYFLFTNDRRAALVAENKNFLEVPKITAEEWKNMTEEQKRPYEEMAKKNKEKYALEMEVYK
GLYMA05G37010.1
Sox
391
459
PKKPASSFILFSKEAKKTLHEERPGINTSTLNALVSLKWKELSVEDRQFWNGQASKAMDAYKKELEEYN
GLYMA05G37010.2
Sox
149
217
KKRPSPPYILWMKDQWNEIKKANSEAEFKEISTMLGSKWKTVTAEEKKPYEEIYHAEKEAYLQMIAKEK
Links
Other
Sox
family TFs
Other
Glycine max
TFs
54 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GLYMA08G02550
Glycine max
GLYMA08G02550
N
0.699
SapurV1A.3543s0020
Salix purpurea
SapurV1A.3543s0020
N
0.669
chr4.CM0025.190.nd
Lotus japonicus
chr4.CM0025.190.nd
I
0.568
Eucgr.E00847
Eucalyptus grandis
Eucgr.E00847
I
0.557
TCM_016416
Theobroma cacao
TCM_016416
I
0.549
evm.TU.supercontig_122.41
Carica papaya
evm.TU.supercontig_122.41
I
0.545
Lus10023090.g
Linum usitatissimum
Lus10023090.g
N
0.538
VIT_02s0025g01220
Vitis vinifera
VIT_02s0025g01220
I
0.538
Gorai.007G025500
Gossypium raimondii
Gorai.007G025500
I
0.537
30190.m010807
Ricinus communis
30190.m010807
I
0.536
POPTR_0001s10410
Populus trichocarpa
POPTR_0001s10410
I
0.533
Cla011101
Citrullus lanatus
Cla011101
I
0.533
Pm024077
Prunus mume
Pm024077
I
0.525
PRUPE_ppa004611mg
Prunus persica
PRUPE_ppa004611mg
I
0.525
SapurV1A.0035s0680
Salix purpurea
SapurV1A.0035s0680
I
0.522
gene32050-v1.0-hybrid
Fragaria vesca
gene32050-v1.0-hybrid
I
0.503
POPTR_0003s13780
Populus trichocarpa
POPTR_0003s13780
I
0.502
Ciclev10023918m.g
Citrus clementina
Ciclev10023918m.g
I
0.491
Cucsa.107270
Cucumis sativus
Cucsa.107270
I
0.482
MTR_8g099305
Medicago truncatula
MTR_8g099305
I
0.479
GSMUA_Achr6G14260_001
Musa acuminata
GSMUA_Achr6G14260_001
I
0.478
AMTR_s00023p00232620
Amborella trichopoda
AMTR_s00023p00232620
N
0.474
Solyc08g082070.2
Solanum lycopersicum
Solyc08g082070.2
I
0.470
Pavir.J07596
Panicum virgatum
Pavir.J07596
I
0.469
PGSC0003DMG400012298
Solanum tuberosum
PGSC0003DMG400012298
I
0.468
PK10992.1
Cannabis sativa
PK10992.1
I
0.467
Lus10032379.g
Linum usitatissimum
Lus10032379.g
I
0.461
Lus10001909.g
Linum usitatissimum
Lus10001909.g
I
0.456
Thhalv10025168m.g
Eutrema salsugineum
Thhalv10025168m.g
I
0.449
OB02G19930
Oryza brachyantha
OB02G19930
N
0.449
HMGB6
Arabidopsis thaliana
AT4G23800
I
0.446
Lus10003904.g
Linum usitatissimum
Lus10003904.g
I
0.445
BRADI3G09690
Brachypodium distachyon
BRADI3G09690
I
0.445
mgf015439m
Mimulus guttatus
mgf015439m
I
0.444
fgenesh2_kg.6__3081__AT4G11080.1
Arabidopsis lyrata
fgenesh2_kg.6__3081__AT4G11080.1
I
0.443
Sb04g009610
Sorghum bicolor
Sb04g009610
I
0.442
Cagra.1226s0043
Capsella grandiflora
Cagra.1226s0043
I
0.441
Bostr.7867s0182
Boechera stricta
Bostr.7867s0182
I
0.441
Ca_05811
Cicer arietinum
Ca_05811
I
0.437
Pavir.Ab01026
Panicum virgatum
Pavir.Ab01026
I
0.435
MDP0000268093
Malus domestica
MDP0000268093
I
0.433
Thhalv10028648m.g
Eutrema salsugineum
Thhalv10028648m.g
I
0.430
Bra013731
Brassica rapa
Bra013731
I
0.430
Bo1g037180
Brassica oleracea
Bo1g037180
I
0.430
GLYMA01G07470
Glycine max
GLYMA01G07470
N
0.429
CLEC003860
Cimex lectularius
CLEC003860
I
0.428
GRMZM2G060253
Zea mays
GRMZM2G060253
I
0.427
AMTR_s00093p00057150
Amborella trichopoda
AMTR_s00093p00057150
N
0.423
ssrp1a
Danio rerio
ENSDARG00000037397
I
0.422
GSMUA_Achr10G14500_001
Musa acuminata
GSMUA_Achr10G14500_001
N
0.421
Si017040m.g
Setaria italica
Si017040m.g
I
0.421
Carubv10000930m.g
Capsella rubella
Carubv10000930m.g
I
0.420
Carubv10007590m.g
Capsella rubella
Carubv10007590m.g
I
0.416
HMGB13
Arabidopsis thaliana
AT4G11080
D
0.415