GRMZM2G013821 (Zea mays)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 GRMZM2G013821 T330318_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G013821_P01 Sox 33 102
GRMZM2G013821_P02 Sox 33 102
GRMZM2G013821_P03 Sox 1 59

Links

Other Sox family TFs
Other Zea mays TFs

193 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LPERR02G22240 Leersia perrieri LPERR02G22240 N 0.737
Si018635m.g Setaria italica Si018635m.g N 0.734
OLONG_000335 Oryza longistaminata OLONG_000335 N 0.724
OMERI02G26620 Oryza meridionalis OMERI02G26620 N 0.724
OGLUM02G27900 Oryza glumaepatula OGLUM02G27900 N 0.724
OB02G34710 Oryza brachyantha OB02G34710 N 0.724
BRADI3G51140 Brachypodium distachyon BRADI3G51140 N 0.724
OBART02G27340 Oryza barthii OBART02G27340 N 0.724
ONIVA02G29880 Oryza nivara ONIVA02G29880 N 0.724
OS02G0670400 Oryza sativa OS02G0670400 N 0.724
OPUNC02G25020 Oryza punctata OPUNC02G25020 N 0.724
ORUFI02G28820 Oryza rufipogon ORUFI02G28820 N 0.724
BGIOSGA008782 Oryza indica BGIOSGA008782 N 0.724
Pavir.J40489 Panicum virgatum Pavir.J40489 N 0.711
Pavir.J38684 Panicum virgatum Pavir.J38684 N 0.711
Sb04g032180 Sorghum bicolor Sb04g032180 N 0.703
GRMZM2G156785 Zea mays GRMZM2G156785 N 0.672
Traes_6AL_9EC9874F1 Triticum aestivum Traes_6AL_9EC9874F1 I 0.659
Traes_6BL_017F7FCF8 Triticum aestivum Traes_6BL_017F7FCF8 I 0.659
TRIUR3_34670 Triticum urartu TRIUR3_34670 I 0.659
Traes_6DL_E5B5F44FC Triticum aestivum Traes_6DL_E5B5F44FC I 0.659
F775_30706 Aegilops tauschii F775_30706 I 0.659
GSMUA_Achr5G11630_001 Musa acuminata GSMUA_Achr5G11630_001 I 0.619
MLOC_57633 Hordeum vulgare MLOC_57633 I 0.604
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.585
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.532
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.522
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.501
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.500
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.496
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.494
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.494
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.493
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.493
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.488
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.488
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.487
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.487
Bo5g030580 Brassica oleracea Bo5g030580 I 0.481
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.479
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.479
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.478
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.477
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.477
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.477
Cla009093 Citrullus lanatus Cla009093 I 0.477
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.477
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.477
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.477
TCM_034406 Theobroma cacao TCM_034406 I 0.477
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.477
MDP0000275042 Malus domestica MDP0000275042 I 0.477
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.477
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.477
30170.m014386 Ricinus communis 30170.m014386 I 0.477
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.477
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.477
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.477
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.477
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.477
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.477
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.477
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.477
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.476
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.469
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.469
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.468
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.467
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.467
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.467
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.467
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.467
Pm018913 Prunus mume Pm018913 I 0.467
MDP0000362980 Malus domestica MDP0000362980 I 0.467
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.467
MDP0000757111 Malus domestica MDP0000757111 I 0.467
29669.m000844 Ricinus communis 29669.m000844 I 0.465
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.465
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.462
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.462
Traes_7DL_0CEFCB39D Triticum aestivum Traes_7DL_0CEFCB39D N 0.461
Traes_7AL_364A6E96F Triticum aestivum Traes_7AL_364A6E96F N 0.461
TCM_000068 Theobroma cacao TCM_000068 I 0.460
Cla018386 Citrullus lanatus Cla018386 I 0.457
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.457
Bo8g070350 Brassica oleracea Bo8g070350 I 0.456
Bo7g061420 Brassica oleracea Bo7g061420 I 0.456
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.456
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.456
F775_27510 Aegilops tauschii F775_27510 I 0.455
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.455
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.455
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.455
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.455
OB06G35870 Oryza brachyantha OB06G35870 I 0.455
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.455
TCM_042534 Theobroma cacao TCM_042534 I 0.454
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.454
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.454
Bra025838 Brassica rapa Bra025838 I 0.454
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.451
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.451
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.451
TCM_021706 Theobroma cacao TCM_021706 I 0.451
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.451
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.451
PDK_20s1781681g001 Phoenix dactylifera PDK_20s1781681g001 N 0.451
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.451
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.449
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.449
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.448
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.448
OBART06G28090 Oryza barthii OBART06G28090 I 0.448
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.448
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.448
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.448
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.448
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.448
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.448
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.448
Si007288m.g Setaria italica Si007288m.g I 0.448
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.448
Ca_09896 Cicer arietinum Ca_09896 I 0.448
HMGB3 Arabidopsis thaliana AT1G20696 I 0.448
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.448
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.448
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.448
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.448
Si031512m.g Setaria italica Si031512m.g I 0.448
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.448
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.448
Pm026798 Prunus mume Pm026798 I 0.448
OS06G0728000 Oryza sativa OS06G0728000 I 0.448
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.448
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.448
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.448
mgf009330m Mimulus guttatus mgf009330m I 0.444
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.444
PK11149.1 Cannabis sativa PK11149.1 I 0.444
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.442
mgf016608m Mimulus guttatus mgf016608m I 0.440
MDP0000242568 Malus domestica MDP0000242568 I 0.440
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.440
MDP0000607529 Malus domestica MDP0000607529 I 0.440
mgf008076m Mimulus guttatus mgf008076m I 0.440
mgf014518m Mimulus guttatus mgf014518m I 0.440
mgf006113m Mimulus guttatus mgf006113m I 0.440
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.438
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.438
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.438
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.438
Ca_10725 Cicer arietinum Ca_10725 I 0.436
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.436
TRIUR3_17303 Triticum urartu TRIUR3_17303 N 0.436
GRMZM2G144398 Zea mays GRMZM2G144398 N 0.434
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.434
Pm002934 Prunus mume Pm002934 I 0.434
mgf000913m Mimulus guttatus mgf000913m I 0.433
Traes_7BL_F45C15FA2 Triticum aestivum Traes_7BL_F45C15FA2 N 0.433
AC186524.3_FG005 Zea mays AC186524.3_FG005 N 0.433
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.431
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.431
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.431
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.427
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.425
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.424
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.424
Cla023817 Citrullus lanatus Cla023817 I 0.424
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.424
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.424
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.424
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.424
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.424
HelroG183541 Helobdella robusta HelroG183541 N 0.423
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.420
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.420
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.420
OB09G25530 Oryza brachyantha OB09G25530 I 0.420
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.420
Pavir.Ga01019 Panicum virgatum Pavir.Ga01019 N 0.419
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.419
Pavir.Gb00881 Panicum virgatum Pavir.Gb00881 N 0.419
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.418
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.418
GRMZM2G145968 Zea mays GRMZM2G145968 N 0.418
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.417
Ca_19340 Cicer arietinum Ca_19340 I 0.417
PK29786.1 Cannabis sativa PK29786.1 I 0.417
mgf016363m Mimulus guttatus mgf016363m I 0.417
TELCIR_05563 Teladorsagia circumcincta TELCIR_05563 N 0.416
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.416
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.415