GRMZM2G125648 (Zea mays)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 GRMZM2G125648 T330332_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G125648_P01 Sox 92 156

Links

Other Sox family TFs
Other Zea mays TFs

97 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.709
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.701
Si014434m.g Setaria italica Si014434m.g N 0.671
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.628
OBART08G00070 Oryza barthii OBART08G00070 I 0.628
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.628
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.628
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.628
OS08G0101100 Oryza sativa OS08G0101100 I 0.628
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.628
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.628
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.628
OB08G10120 Oryza brachyantha OB08G10120 N 0.609
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.603
Pm006054 Prunus mume Pm006054 I 0.603
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.600
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.599
MDP0000205665 Malus domestica MDP0000205665 I 0.592
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.586
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.586
Pavir.Fb00026 Panicum virgatum Pavir.Fb00026 N 0.574
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.566
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.566
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.564
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.564
Traes_7AL_959534EDB Triticum aestivum Traes_7AL_959534EDB I 0.564
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.564
MLOC_77667 Hordeum vulgare MLOC_77667 I 0.562
LPERR08G00140 Leersia perrieri LPERR08G00140 N 0.539
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.531
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.528
Bo2g160920 Brassica oleracea Bo2g160920 I 0.526
Bra029371 Brassica rapa Bra029371 I 0.526
TCM_007659 Theobroma cacao TCM_007659 I 0.521
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.520
OESDEN_24828 Oesophagostomum dentatum OESDEN_24828 N 0.513
PK03866.1 Cannabis sativa PK03866.1 I 0.512
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.509
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.507
30131.m007272 Ricinus communis 30131.m007272 I 0.506
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.498
Cla009222 Citrullus lanatus Cla009222 I 0.498
fgenesh2_kg.6__1935__AT5G23420.1 Arabidopsis lyrata fgenesh2_kg.6__1935__AT5G23420.1 N 0.492
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.484
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.484
BRADI3G12920 Brachypodium distachyon BRADI3G12920 I 0.479
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.469
Bra026498 Brassica rapa Bra026498 I 0.468
Bo9g014140 Brassica oleracea Bo9g014140 I 0.468
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.467
fgenesh1_pg.4_#_114 Coccomyxa subellipsoidea C169 fgenesh1_pg.4_#_114 N 0.466
fgeneshCV_pg.C_scaffold_4000123 Chlorella vulgaris fgeneshCV_pg.C_scaffold_4000123 N 0.466
PK14705.1 Cannabis sativa PK14705.1 I 0.461
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.459
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.457
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.457
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.454
OBART04G21800 Oryza barthii OBART04G21800 N 0.450
OGLUM04G21840 Oryza glumaepatula OGLUM04G21840 N 0.450
BGIOSGA016928 Oryza indica BGIOSGA016928 N 0.450
ORGLA04G0188600 Oryza glaberrima ORGLA04G0188600 N 0.450
ONIVA04G20340 Oryza nivara ONIVA04G20340 N 0.450
OPUNC04G19550 Oryza punctata OPUNC04G19550 N 0.450
OS04G0564600 Oryza sativa OS04G0564600 N 0.450
OB04G28810 Oryza brachyantha OB04G28810 N 0.450
ORUFI04G23400 Oryza rufipogon ORUFI04G23400 N 0.450
OMERI04G18350 Oryza meridionalis OMERI04G18350 N 0.450
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.448
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.446
ENSMEUG00000004078 Macropus eugenii ENSMEUG00000004078 N 0.445
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.439
mgf009124m Mimulus guttatus mgf009124m N 0.434
ENSOGAG00000034481 Otolemur garnettii ENSOGAG00000034481 N 0.434
scaffold_602413.1 Arabidopsis lyrata scaffold_602413.1 N 0.431
HMGB7 Arabidopsis thaliana AT5G23420 N 0.431
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.430
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.430
TCM_042534 Theobroma cacao TCM_042534 I 0.430
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.430
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.430
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.429
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.428
F775_06533 Aegilops tauschii F775_06533 N 0.428
Traes_2DL_6CACFD720 Triticum aestivum Traes_2DL_6CACFD720 N 0.428
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.427
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.426
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.422
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.422
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.422
BRADI5G18460 Brachypodium distachyon BRADI5G18460 N 0.420
GUITHDRAFT_135067 Guillardia theta GUITHDRAFT_135067 N 0.420
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.419
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.419
AAEL002381 Aedes aegypti AAEL002381 N 0.419
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.417
mgf009330m Mimulus guttatus mgf009330m I 0.417
MDP0000607529 Malus domestica MDP0000607529 I 0.415