GSMUA_Achr6G14260_001 (Musa acuminata)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 GSMUA_Achr6G14260_001 T330370_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.419 0.634
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.419 0.634
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr6P14260_001 Sox 188 256
GSMUA_Achr6P14260_001 Sox 304 370
GSMUA_Achr6P14260_001 Sox 429 497

Links

Other Sox family TFs
Other Musa acuminata TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_016416 Theobroma cacao TCM_016416 I 0.548
30190.m010807 Ricinus communis 30190.m010807 I 0.537
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.530
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.529
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.526
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.523
Cla011101 Citrullus lanatus Cla011101 I 0.522
GSMUA_Achr10G14500_001 Musa acuminata GSMUA_Achr10G14500_001 N 0.517
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.515
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.511
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.510
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.505
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.494
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.492
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.491
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.489
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.488
Pm024077 Prunus mume Pm024077 I 0.488
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.482
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.481
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.478
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.477
OB02G19930 Oryza brachyantha OB02G19930 N 0.476
mgf015439m Mimulus guttatus mgf015439m I 0.474
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.474
LPERR02G09420 Leersia perrieri LPERR02G09420 N 0.466
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.465
Si017040m.g Setaria italica Si017040m.g I 0.464
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.463
OMERI02G11890 Oryza meridionalis OMERI02G11890 N 0.456
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.454
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.454
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.447
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.445
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.439
OPUNC02G09900 Oryza punctata OPUNC02G09900 I 0.437
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.436
BGIOSGA006746 Oryza indica BGIOSGA006746 I 0.435
OGLUM02G11100 Oryza glumaepatula OGLUM02G11100 I 0.435
OBART02G11160 Oryza barthii OBART02G11160 I 0.435
ONIVA02G12490 Oryza nivara ONIVA02G12490 I 0.435
ORUFI02G11130 Oryza rufipogon ORUFI02G11130 I 0.435
PK10992.1 Cannabis sativa PK10992.1 I 0.433
MTR_8g099305 Medicago truncatula MTR_8g099305 I 0.432
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.427
OLONG_021730 Oryza longistaminata OLONG_021730 N 0.423
HMGB13 Arabidopsis thaliana AT4G11080 D 0.419
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.418
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.417