CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gw1.32.10.1
(
Bigelowiella natans
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
gw1.32.10.1
T330458_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
JGI_V11_19447
Sox
534
602
PKKNRSAFVYFSQDKRMEVKEENPDKSRAEIGKILGDMWKDLEDDEKKPYEDRASKDLTRYRSEKKKYE
Links
Other
Sox
family TFs
Other
Bigelowiella natans
TFs
33 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
estExt_Genewise1.C_130158
Chlorella vulgaris
estExt_Genewise1.C_130158
I
0.520
estExt_fgenesh1_pm.C_130068
Coccomyxa subellipsoidea C169
estExt_fgenesh1_pm.C_130068
I
0.520
estExt_Genewise1.C_510099
Volvox carteri
estExt_Genewise1.C_510099
N
0.485
SPPG_03502
Spizellomyces punctatus
SPPG_03502
N
0.481
Bra033055
Brassica rapa
Bra033055
N
0.476
estExt_Genewise1.C_10428
Volvox carteri
estExt_Genewise1.C_10428
N
0.471
PTTG_09594
Puccinia triticina
PTTG_09594
I
0.458
PGTG_04701
Puccinia graminis
PGTG_04701
I
0.458
BOTBODRAFT_30512
Botryobasidium botryosum
BOTBODRAFT_30512
N
0.457
M407DRAFT_81488
Tulasnella calospora
M407DRAFT_81488
I
0.455
estExt_fgeneshDP_kg.C_1050006
Dictyostelium purpureum
estExt_fgeneshDP_kg.C_1050006
I
0.451
SPPG_05251
Spizellomyces punctatus
SPPG_05251
I
0.451
O9G_002262
Rozella allomycis
O9G_002262
I
0.449
gene18862-v1.0-hybrid
Fragaria vesca
gene18862-v1.0-hybrid
I
0.442
estExt_Genewise1.C_690028
Volvox carteri
estExt_Genewise1.C_690028
N
0.442
gw1.204.1.1
Dictyostelium purpureum
gw1.204.1.1
I
0.441
cassava42041.valid.m1
Manihot esculenta
cassava42041.valid.m1
I
0.441
29822.m003476
Ricinus communis
29822.m003476
I
0.441
IGS.gm_15_00221
Chlorella NC64A
IGS.gm_15_00221
I
0.433
WALSEDRAFT_53977
Wallemia sebi
WALSEDRAFT_53977
I
0.433
CHLREDRAFT_142283
Chlamydomonas reinhardtii
CHLREDRAFT_142283
N
0.429
Thhalv10017360m.g
Eutrema salsugineum
Thhalv10017360m.g
N
0.426
fgenesh1_pg.C_scaffold_9000255
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_9000255
I
0.423
SOCG_02294
Schizosaccharomyces octosporus
SOCG_02294
I
0.423
SPOG_00531
Schizosaccharomyces cryophilus
SPOG_00531
I
0.421
MELLADRAFT_31192
Melampsora laricipopulina
MELLADRAFT_31192
I
0.421
Pavir.Eb02691
Panicum virgatum
Pavir.Eb02691
I
0.417
HMGB2
Arabidopsis thaliana
AT1G20693
I
0.416
Bostr.7128s0663
Boechera stricta
Bostr.7128s0663
I
0.416
HMGB2
Arabidopsis lyrata
fgenesh2_kg.1__2255__AT1G20693.2
I
0.416
Cagra.6160s0028
Capsella grandiflora
Cagra.6160s0028
I
0.416
Carubv10010586m.g
Capsella rubella
Carubv10010586m.g
I
0.416
CHLREDRAFT_192899
Chlamydomonas reinhardtii
CHLREDRAFT_192899
N
0.415