LotgiG119700 (Lottia gigantea)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 LotgiG119700 T330933_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tcf7
M00193_2.00
Mus musculus
HNHNNNNNN

NNNNNNDND
PBM
Badis et al.(2009)
Tcf7_0950
0.452 0.818
Tcf7
M03532_2.00
Mus musculus
AAASATCAAAGV

BCTTTGATSTTT
SELEX
Jolma et al.(2013)
Tcf7_1
0.452 0.818
TCF7
M05755_2.00
Homo sapiens
DSATCAAWS

SWTTGATSH
SELEX
Yin et al.(2017)
TCF7_eDBD_HT-SELEX_1
0.452 0.818
TCF7
M05756_2.00
Homo sapiens
WCWKCGYCYCGWTGW

WCAWCGRGRCGMWGW
SELEX
Yin et al.(2017)
TCF7_eDBD_HT-SELEX_2
0.452 0.818
TCF7
M05890_2.00
Homo sapiens
NNASATCAAASNN

NNSTTTGATSTNN
SMiLE-seq
Isakova et al.(2017)
TCF7
0.452 0.818
TCF7
M09386_2.00
Homo sapiens
NBBCTTTSAWSTBNBN

NVNVASWTSAAAGVVN
Misc
Kulakovskiy et al.(2013)
TCF7_HUMAN.H11MO.0.A
0.452 0.818
Tcf7
M09400_2.00
Mus musculus
VVRVADSAAARVVVNV

BNBBBYTTTSHTBYBB
Misc
Kulakovskiy et al.(2013)
TCF7_MOUSE.H11MO.0.A
0.452 0.818
TCF7
M11294_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF1_Q5_01
0.452 0.818
TCF7
M11295_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF1_Q5
0.452 0.818
TCF7
M05757_2.00
Homo sapiens
RSATCAAAS

STTTGATSY
SELEX
Yin et al.(2017)
TCF7_eDBD_Methyl-HT-SELEX_1
0.452 0.818
TCF7
M05758_2.00
Homo sapiens
WCAWCGRGRCGMWGW

WCWKCGYCYCGWTGW
SELEX
Yin et al.(2017)
TCF7_eDBD_Methyl-HT-SELEX_2
0.452 0.818
Tcf7l2
M00198_2.00
Mus musculus
NSWTCAAAVN

NBTTTGAWSN
PBM
Badis et al.(2009)
Tcf7l2_3461
0.426 0.800
Lef1
M00200_2.00
Mus musculus
NSWTCAAAVN

NBTTTGAWSN
PBM
Badis et al.(2009)
Lef1_3504
0.426 0.800
LEF1
M03511_2.00
Homo sapiens
NRAGATCAAAGRVWW

WWBYCTTTGATCTYN
SELEX
Jolma et al.(2013)
LEF1_1
0.426 0.800
LEF1
M05771_2.00
Homo sapiens
NSATCAAAS

STTTGATSN
SELEX
Yin et al.(2017)
LEF1_eDBD_HT-SELEX_1
0.426 0.800
LEF1
M05772_2.00
Homo sapiens
WCATCGRGRCGCTGW

WCAGCGYCYCGATGW
SELEX
Yin et al.(2017)
LEF1_eDBD_HT-SELEX_2
0.426 0.800
LEF1
M05775_2.00
Homo sapiens
ASATCAAAG

CTTTGATST
SELEX
Yin et al.(2017)
LEF1_FL_HT-SELEX_1
0.426 0.800
LEF1
M05776_2.00
Homo sapiens
ACATCGRGRCGCTGW

WCAGCGYCYCGATGT
SELEX
Yin et al.(2017)
LEF1_FL_HT-SELEX_2
0.426 0.800
LEF1
M05895_2.00
Homo sapiens
WTCAAAGNNN

NNNCTTTGAW
SMiLE-seq
Isakova et al.(2017)
LEF1
0.426 0.800
Tcf7l2
M02646_2.00
Mus musculus
SATCAAAGN

NCTTTGATS
SELEX
Hallikas et al.(2006)
Tcf4
0.426 0.800
TCF7L2
M08167_2.00
Homo sapiens
NVASWTCAAAGVVN

NBBCTTTGAWSTBN
ChIP-seq
Mathelier et al.(2014)
MA0523.1
0.426 0.800
TCF7L2
M09393_2.00
Homo sapiens
DGCAGSTGKS

SMCASCTGCH
Misc
Kulakovskiy et al.(2013)
ITF2_HUMAN.H11MO.0.C
0.426 0.800
LEF1
M09392_2.00
Homo sapiens
BSYTTTSWNNTBYH

DRVANNWSAAARSV
Misc
Kulakovskiy et al.(2013)
LEF1_HUMAN.H11MO.0.A
0.426 0.800
TCF7L2
M09394_2.00
Homo sapiens
VVASWTCAAAGVV

BBCTTTGAWSTBB
Misc
Kulakovskiy et al.(2013)
TF7L2_HUMAN.H11MO.0.A
0.426 0.800
Lef1
M09402_2.00
Mus musculus
BSYTTTSWNNTBYH

DRVANNWSAAARSV
Misc
Kulakovskiy et al.(2013)
LEF1_MOUSE.H11MO.0.B
0.426 0.800
Tcf7l2
M09401_2.00
Mus musculus
VVASWTCAAAGVV

BBCTTTGAWSTBB
Misc
Kulakovskiy et al.(2013)
TF7L2_MOUSE.H11MO.0.A
0.426 0.800
TCF7L2
M09638_2.00
Homo sapiens
CCTTTGAWST

ASWTCAAAGG
Misc
Heinz et al.(2010)
K562-TCF7L2_GSE29196
0.426 0.800
LEF1
M11311_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q2_01
0.426 0.800
LEF1
M11312_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q3
0.426 0.800
LEF1
M11313_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q4
0.426 0.800
LEF1
M11314_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q5_01
0.426 0.800
LEF1
M11315_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q5
0.426 0.800
TCF7L2
M11316_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF4_Q5_01
0.426 0.800
TCF7L2
M11317_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF4_Q5_02
0.426 0.800
TCF7L2
M11318_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF4_Q5
0.426 0.800
TCF7L2
M11319_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF7L2_06
0.426 0.800
LEF1
M05773_2.00
Homo sapiens
ASATCAAAG

CTTTGATST
SELEX
Yin et al.(2017)
LEF1_eDBD_Methyl-HT-SELEX_1
0.426 0.800
LEF1
M05774_2.00
Homo sapiens
WCATCGRGGCGCTGW

WCAGCGCCYCGATGW
SELEX
Yin et al.(2017)
LEF1_eDBD_Methyl-HT-SELEX_2
0.426 0.800
LEF1
M05777_2.00
Homo sapiens
ASATCAAAG

CTTTGATST
SELEX
Yin et al.(2017)
LEF1_FL_Methyl-HT-SELEX_1
0.426 0.800
LEF1
M05778_2.00
Homo sapiens
ACATCGRGRCGCTGW

WCAGCGYCYCGATGT
SELEX
Yin et al.(2017)
LEF1_FL_Methyl-HT-SELEX_2
0.426 0.800
Tcf7l1
M00207_2.00
Mus musculus
NNNNWWDN

NHWWNNNN
PBM
Badis et al.(2009)
Tcf3_3787
0.426 0.745
TCF7L1
M03512_2.00
Homo sapiens
AAAGATCAAAGG

CCTTTGATCTTT
SELEX
Jolma et al.(2013)
TCF7L1_1
0.426 0.745
TCF7L1
M05779_2.00
Homo sapiens
RSATCAAAG

CTTTGATSY
SELEX
Yin et al.(2017)
TCF7L1_eDBD_HT-SELEX_1
0.426 0.745
TCF7L1
M05780_2.00
Homo sapiens
ACATCGRGRCGCTGW

WCAGCGYCYCGATGT
SELEX
Yin et al.(2017)
TCF7L1_eDBD_HT-SELEX_2
0.426 0.745
TCF7L1
M09395_2.00
Homo sapiens
NBBCTTTGAWSTB

VASWTCAAAGVVN
Misc
Kulakovskiy et al.(2013)
TF7L1_HUMAN.H11MO.0.B
0.426 0.745
Tcf7l1
M09406_2.00
Mus musculus
BBCTTTGAWST

ASWTCAAAGVV
Misc
Kulakovskiy et al.(2013)
TF7L1_MOUSE.H11MO.0.A
0.426 0.745
Tcf7l1
M09407_2.00
Mus musculus
NDGCAGSTGBB

VVCASCTGCHN
Misc
Kulakovskiy et al.(2013)
TFE2_MOUSE.H11MO.0.A
0.426 0.745
TCF7L1
M11320_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF3_01
0.426 0.745
TCF7L1
M11321_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF3_Q6_01
0.426 0.745
TCF7L1
M11322_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF3_Q6
0.426 0.745
TCF7L1
M05781_2.00
Homo sapiens
CTTTGATSY

RSATCAAAG
SELEX
Yin et al.(2017)
TCF7L1_eDBD_Methyl-HT-SELEX_1
0.426 0.745
TCF7L1
M05782_2.00
Homo sapiens
ACATCGRGRCGCTGW

WCAGCGYCYCGATGT
SELEX
Yin et al.(2017)
TCF7L1_eDBD_Methyl-HT-SELEX_2
0.426 0.745
pan
M06451_2.00
Drosophila melanogaster
DWYCAAAD

HTTTGRWH
B1H
Zhu et al.(2011)
pan_FlyReg_FBgn0085432
0.418 0.764
pan
M08428_2.00
Drosophila melanogaster
WHNAAAVRNRSCGM

KCGSYNYBTTTNDW
ChIP-chip
Mathelier et al.(2014)
MA0237.2
0.418 0.764
pan
M11337_2.00
Drosophila melanogaster
AAGATCAAAGG

CCTTTGATCTT
Transfac
Matys et al.(2006)
I$TCF_1
0.418 0.764
pan
M11338_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$TCF_Q6
0.418 0.764
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LotgiP119700 Sox 1 55

Links

Other Sox family TFs
Other Lottia gigantea TFs

360 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R002277 Calypte anna Aan_R002277 I 0.000
Aan_R005866 Calypte anna Aan_R005866 I 0.000
Aan_R007025 Calypte anna Aan_R007025 I 0.000
Afo_R003680 Aptenodytes forsteri Afo_R003680 I 0.000
Afo_R008930 Aptenodytes forsteri Afo_R008930 I 0.000
Alligator_sinensis_CCG010967.1 Alligator sinensis Alligator_sinensis_CCG010967.1 I 0.000
Brh_R006709 Buceros rhinoceros Brh_R006709 I 0.000
Cmyd_10009744 Chelonia mydas Cmyd_10009744 I 0.000
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.000
ENSACAG00000017764 Anolis carolinensis ENSACAG00000017764 I 0.000
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I 0.000
ENSAMEG00000011453 Ailuropoda melanoleuca ENSAMEG00000011453 I 0.000
ENSAMXG00000001433 Astyanax mexicanus ENSAMXG00000001433 I 0.000
ENSAMXG00000001573 Astyanax mexicanus ENSAMXG00000001573 I 0.000
ENSAMXG00000016813 Astyanax mexicanus ENSAMXG00000016813 I 0.000
ENSAPLG00000014264 Anas platyrhynchos ENSAPLG00000014264 I 0.000
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I 0.000
LIN28B Bos taurus ENSBTAG00000043973 I 0.000
ENSBTAG00000048256 Bos taurus ENSBTAG00000048256 I 0.000
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I 0.000
ENSBTAP00000053651-D1 Bos grunniens ENSBTAP00000053651-D1 I 0.000
LIN28B Canis familiaris ENSCAFG00000003598 I 0.000
LIN28A Canis familiaris ENSCAFG00000012488 I 0.000
LIN28B Choloepus hoffmanni ENSCHOG00000001682 I 0.000
LIN28A Choloepus hoffmanni ENSCHOG00000002073 I 0.000
LIN28B Callithrix jacchus ENSCJAG00000001671 I 0.000
LIN28A Callithrix jacchus ENSCJAG00000009796 I 0.000
ENSCJAG00000022770 Callithrix jacchus ENSCJAG00000022770 I 0.000
LIN28B Cavia porcellus ENSCPOG00000006178 I 0.000
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.000
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I 0.000
ENSCSAG00000014708 Chlorocebus sabaeus ENSCSAG00000014708 I 0.000
LIN28A Danio rerio ENSDARG00000004328 I 0.000
lin28a Danio rerio ENSDARG00000016999 I 0.000
lin28b Danio rerio ENSDARG00000052511 I 0.000
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.000
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.000
LIN28A Equus caballus ENSECAG00000020267 I 0.000
LIN28B Equus caballus ENSECAG00000020994 I 0.000
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.000
LIN28A Erinaceus europaeus ENSEEUG00000012085 I 0.000
LIN28B Echinops telfairi ENSETEG00000015340 I 0.000
ENSFALG00000000374 Ficedula albicollis ENSFALG00000000374 I 0.000
ENSFALG00000011574 Ficedula albicollis ENSFALG00000011574 I 0.000
LIN28B Felis catus ENSFCAG00000005058 I 0.000
LIN28A Felis catus ENSFCAG00000012810 I 0.000
LIN28A Homo sapiens ENSG00000131914 I 0.000
LIN28B Homo sapiens ENSG00000187772 D 0.000
lin28a Gasterosteus aculeatus ENSGACG00000007826 I 0.000
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I 0.000
si:ch1073-284b18.2 Gasterosteus aculeatus ENSGACG00000013893 I 0.000
ENSGALG00000000388 Gallus gallus ENSGALG00000000388 I 0.000
LIN28B Gallus gallus ENSGALG00000026761 I 0.000
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.000
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.000
ENSGMOG00000010704 Gadus morhua ENSGMOG00000010704 I 0.000
ENSGMOG00000015523 Gadus morhua ENSGMOG00000015523 I 0.000
ENSGMOG00000015660 Gadus morhua ENSGMOG00000015660 I 0.000
ENSLACG00000002747 Latimeria chalumnae ENSLACG00000002747 I 0.000
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I 0.000
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.000
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.000
ENSLOCG00000003353 Lepisosteus oculatus ENSLOCG00000003353 I 0.000
ENSLOCG00000016539 Lepisosteus oculatus ENSLOCG00000016539 I 0.000
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I 0.000
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.000
ENSMICG00000002297 Microcebus murinus ENSMICG00000002297 I 0.000
LIN28B Myotis lucifugus ENSMLUG00000006883 I 0.000
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I 0.000
LIN28B Macaca mulatta ENSMMUG00000014470 I 0.000
ENSMMUP00000018998 Macaca fascicularis ENSMMUP00000018998 I 0.000
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.000
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.000
ENSMPUG00000009489 Mustela putorius furo ENSMPUG00000009489 I 0.000
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I 0.000
Lin28a Mus musculus ENSMUSG00000050966 I 0.000
Lin28b Mus musculus ENSMUSG00000063804 I 0.000
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I 0.000
ENSNLEG00000014146 Nomascus leucogenys ENSNLEG00000014146 I 0.000
LIN28B Ornithorhynchus anatinus ENSOANG00000010299 I 0.000
ENSOARG00000003913 Ovis aries ENSOARG00000003913 I 0.000
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I 0.000
ENSOARG00000011404 Ovis aries ENSOARG00000011404 I 0.000
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.000
ENSOCUG00000011640 Oryctolagus cuniculus ENSOCUG00000011640 I 0.000
LIN28B Oryctolagus cuniculus ENSOCUG00000017850 I 0.000
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.000
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.000
LIN28A Otolemur garnettii ENSOGAG00000003971 I 0.000
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.000
ENSONIG00000014706 Oreochromis niloticus ENSONIG00000014706 I 0.000
ENSONIG00000016204 Oreochromis niloticus ENSONIG00000016204 I 0.000
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.000
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.000
LIN28B Oryzias latipes ENSORLG00000012891 I 0.000
si:ch1073-284b18.2 Oryzias latipes ENSORLG00000014369 I 0.000
ENSP00000254231 Macaca fascicularis ENSP00000254231 I 0.000
ENSPANG00000005196 Papio anubis ENSPANG00000005196 I 0.000
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I 0.000
ENSPFOG00000014054 Poecilia formosa ENSPFOG00000014054 I 0.000
ENSPFOG00000019352 Poecilia formosa ENSPFOG00000019352 I 0.000
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I 0.000
ENSPPYG00000016875 Pongo abelii ENSPPYG00000016875 I 0.000
ENSPSIG00000002635 Pelodiscus sinensis ENSPSIG00000002635 I 0.000
LIN28A Pan troglodytes ENSPTRG00000000384 I 0.000
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.000
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.000
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.000
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.000
Lin28a Rattus norvegicus ENSRNOG00000060320 I 0.000
LIN28B Sorex araneus ENSSARG00000008374 I 0.000
ENSSHAG00000012434 Sarcophilus harrisii ENSSHAG00000012434 I 0.000
LIN28A Sus scrofa ENSSSCG00000003557 I 0.000
ENSSSCG00000004365 Sus scrofa ENSSSCG00000004365 I 0.000
ENSSTOG00000002692 Ictidomys tridecemlineatus ENSSTOG00000002692 I 0.000
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I 0.000
ENSTGUG00000001037 Taeniopygia guttata ENSTGUG00000001037 I 0.000
LIN28B Taeniopygia guttata ENSTGUG00000012225 I 0.000
lin28a Tetraodon nigroviridis ENSTNIG00000009802 I 0.000
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.000
si:ch1073-284b18.2 Takifugu rubripes ENSTRUG00000006069 I 0.000
LIN28B Takifugu rubripes ENSTRUG00000008428 I 0.000
lin28a Takifugu rubripes ENSTRUG00000009454 I 0.000
ENSTSYG00000006480 Tarsius syrichta ENSTSYG00000006480 I 0.000
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I 0.000
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.000
LIN28B Tursiops truncatus ENSTTRG00000014919 I 0.000
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I 0.000
ENSXMAG00000003450 Xiphophorus maculatus ENSXMAG00000003450 I 0.000
ENSXMAG00000014593 Xiphophorus maculatus ENSXMAG00000014593 I 0.000
Gfo_R011576 Geospiza fortis Gfo_R011576 I 0.000
Gfo_R012200 Geospiza fortis Gfo_R012200 I 0.000
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I 0.000
Myotis_brandtii_LIN28B_10034705 Myotis brandtii Myotis_brandtii_LIN28B_10034705 I 0.000
Ogr09706 Ophisaurus gracilis Ogr09706 I 0.000
Pvit_09294 Pogona vitticeps Pvit_09294 I 0.000
Pvit_17184 Pogona vitticeps Pvit_17184 I 0.000
lin28b Xenopus tropicalis XB-GENE-1218969 I 0.000
lin28b.S Xenopus laevis XB-GENE-1218973 I 0.000
lin28a Xenopus tropicalis XB-GENE-491384 I 0.000
lin28a.S Xenopus laevis XB-GENE-866059 I 0.000
yakG040859 Bos grunniens yakG040859 I 0.000