CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LPERR08G00140
(
Leersia perrieri
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
LPERR08G00140
T330972_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LPERR08G00140.1
Sox
94
161
GKRPPSAFILFMADFRKEYKAQHPDKKSVSAAAKEGGERWNAMSDQDKKPYFDKAAELKAQHDNGERS
Links
Other
Sox
family TFs
Other
Leersia perrieri
TFs
61 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ONIVA08G00070
Oryza nivara
ONIVA08G00070
I
0.610
OLONG_014445
Oryza longistaminata
OLONG_014445
I
0.610
OPUNC08G00150
Oryza punctata
OPUNC08G00150
I
0.610
ORUFI08G00080
Oryza rufipogon
ORUFI08G00080
I
0.610
OS08G0101100
Oryza sativa
OS08G0101100
I
0.610
OGLUM08G00090
Oryza glumaepatula
OGLUM08G00090
I
0.610
OBART08G00070
Oryza barthii
OBART08G00070
I
0.610
BGIOSGA027814
Oryza indica
BGIOSGA027814
I
0.610
BGIOSGA027819
Oryza indica
BGIOSGA027819
I
0.610
OB08G10120
Oryza brachyantha
OB08G10120
N
0.602
Sb07g000230
Sorghum bicolor
Sb07g000230
N
0.567
Pavir.J10680
Panicum virgatum
Pavir.J10680
N
0.542
GRMZM2G125648
Zea mays
GRMZM2G125648
N
0.539
PDK_20s1709771g002
Phoenix dactylifera
PDK_20s1709771g002
N
0.537
Ciclev10016587m.g
Citrus clementina
Ciclev10016587m.g
N
0.515
orange1.1g026850m.g
Citrus sinensis
orange1.1g026850m.g
N
0.515
MDP0000205665
Malus domestica
MDP0000205665
I
0.514
Si014434m.g
Setaria italica
Si014434m.g
N
0.507
SapurV1A.0766s0120
Salix purpurea
SapurV1A.0766s0120
I
0.507
evm.TU.supercontig_247.1
Carica papaya
evm.TU.supercontig_247.1
N
0.507
HMGB6
Populus trichocarpa
POPTR_0007s15320
I
0.507
Pm006054
Prunus mume
Pm006054
I
0.503
PRUPE_ppa026912mg
Prunus persica
PRUPE_ppa026912mg
I
0.503
OESDEN_24828
Oesophagostomum dentatum
OESDEN_24828
N
0.501
Solyc04g008820.2
Solanum lycopersicum
Solyc04g008820.2
I
0.487
ENSOGAG00000034481
Otolemur garnettii
ENSOGAG00000034481
N
0.479
cassava23716.valid.m1
Manihot esculenta
cassava23716.valid.m1
I
0.474
Traes_7DL_824BFE90C
Triticum aestivum
Traes_7DL_824BFE90C
I
0.472
Traes_7BL_871FCAF2F
Triticum aestivum
Traes_7BL_871FCAF2F
I
0.472
TRIUR3_35367
Triticum urartu
TRIUR3_35367
I
0.472
Traes_7AL_959534EDB
Triticum aestivum
Traes_7AL_959534EDB
I
0.472
MLOC_77667
Hordeum vulgare
MLOC_77667
I
0.472
HCOI01912600
Haemonchus contortus
HCOI01912600
I
0.465
HCOI01913300
Haemonchus contortus
HCOI01913300
I
0.465
HMGB6
Vitis vinifera
VIT_10s0071g00870
I
0.459
Gorai.008G147700
Gossypium raimondii
Gorai.008G147700
I
0.457
TCM_007659
Theobroma cacao
TCM_007659
I
0.456
orange1.1g029982m.g
Citrus sinensis
orange1.1g029982m.g
I
0.449
PGSC0003DMG400025304
Solanum tuberosum
PGSC0003DMG400025304
I
0.446
ENSOGAG00000026034
Otolemur garnettii
ENSOGAG00000026034
I
0.439
PK14705.1
Cannabis sativa
PK14705.1
I
0.437
Lus10041009.g
Linum usitatissimum
Lus10041009.g
N
0.435
Bra029371
Brassica rapa
Bra029371
I
0.433
29669.m000844
Ricinus communis
29669.m000844
I
0.433
Bo2g160920
Brassica oleracea
Bo2g160920
I
0.433
fgenesh2_kg.6__1935__AT5G23420.1
Arabidopsis lyrata
fgenesh2_kg.6__1935__AT5G23420.1
N
0.432
PDK_20s1355261g001
Phoenix dactylifera
PDK_20s1355261g001
N
0.431
PK03866.1
Cannabis sativa
PK03866.1
I
0.428
Aquca_015_00344
Aquilegia coerulea
Aquca_015_00344
I
0.426
BRADI3G12920
Brachypodium distachyon
BRADI3G12920
I
0.426
Aquca_004_00335
Aquilegia coerulea
Aquca_004_00335
I
0.423
Ssrp
Drosophila pseudoobscura
FBgn0078456
N
0.422
GL11071
Drosophila persimilis
FBgn0148681
N
0.422
Cla009222
Citrullus lanatus
Cla009222
I
0.420
Cucsa.300030
Cucumis sativus
Cucsa.300030
I
0.420
Eucgr.J00336
Eucalyptus grandis
Eucgr.J00336
I
0.419
ACEP16621
Atta cephalotes
ACEP16621
N
0.419
PRUPE_ppa011596mg
Prunus persica
PRUPE_ppa011596mg
I
0.418
SapurV1A.0085s0030
Salix purpurea
SapurV1A.0085s0030
I
0.416
POPTR_0005s10440
Populus trichocarpa
POPTR_0005s10440
I
0.416
Pavir.Fb00026
Panicum virgatum
Pavir.Fb00026
N
0.415