MTR_4g094622 (Medicago truncatula)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 MTR_4g094622 T331377_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
KEH31376 Sox 64 133

Links

Other Sox family TFs
Other Medicago truncatula TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_05073 Aegilops tauschii F775_05073 I 0.609
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.614
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.524
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.433
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.560
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.439
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.622
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.439
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.649
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.648
Bo4g182600 Brassica oleracea Bo4g182600 N 0.622
Bra021911 Brassica rapa Bra021911 N 0.622
PK22924.1 Cannabis sativa PK22924.1 N 0.580
Cagra.2350s0098 Capsella grandiflora Cagra.2350s0098 I 0.416
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.649
Carubv10005973m.g Capsella rubella Carubv10005973m.g I 0.416
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.649
Ca_05351 Cicer arietinum Ca_05351 I 0.454
Ca_05164 Cicer arietinum Ca_05164 N 0.705
Ca_05162 Cicer arietinum Ca_05162 N 0.705
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.639
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.639
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.646
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.626
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.595
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.599
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.640
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.640
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.421
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.421
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.639
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.599
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.503
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.555
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.543
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.454
MDP0000695104 Malus domestica MDP0000695104 N 0.626
MDP0000170945 Malus domestica MDP0000170945 N 0.510
MDP0000143506 Malus domestica MDP0000143506 N 0.628
MDP0000392251 Malus domestica MDP0000392251 N 0.466
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.574
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.611
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.425
mgf009922m Mimulus guttatus mgf009922m N 0.543
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.563
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.574
OBART01G25720 Oryza barthii OBART01G25720 N 0.504
OB01G34910 Oryza brachyantha OB01G34910 I 0.559
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.504
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.504
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.504
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.501
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.504
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.504
OS01G0666200 Oryza sativa OS01G0666200 N 0.504
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.630
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.538
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.630
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.623
29693.m002035 Ricinus communis 29693.m002035 N 0.631
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.621
SELMODRAFT_117986 Selaginella moellendorffii SELMODRAFT_117986 I 0.423
SELMODRAFT_75453 Selaginella moellendorffii SELMODRAFT_75453 I 0.423
Si003021m.g Setaria italica Si003021m.g N 0.655
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.623
TCM_029514 Theobroma cacao TCM_029514 N 0.639
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.609
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.630