OB08G10120 (Oryza brachyantha)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 OB08G10120 T331560_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
OB08G10120.1 Sox 89 156

Links

Other Sox family TFs
Other Oryza brachyantha TFs

165 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.695
OBART08G00070 Oryza barthii OBART08G00070 I 0.695
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.695
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.695
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.695
OS08G0101100 Oryza sativa OS08G0101100 I 0.695
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.695
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.695
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.695
MDP0000205665 Malus domestica MDP0000205665 I 0.621
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.615
Pm006054 Prunus mume Pm006054 I 0.610
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.610
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.609
LPERR08G00140 Leersia perrieri LPERR08G00140 N 0.602
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.595
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.595
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.582
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.580
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.577
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.577
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.567
TCM_007659 Theobroma cacao TCM_007659 I 0.564
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.557
Si014434m.g Setaria italica Si014434m.g N 0.550
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.547
Bra029371 Brassica rapa Bra029371 I 0.545
Bo2g160920 Brassica oleracea Bo2g160920 I 0.545
fgenesh2_kg.6__1935__AT5G23420.1 Arabidopsis lyrata fgenesh2_kg.6__1935__AT5G23420.1 N 0.542
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.539
PK03866.1 Cannabis sativa PK03866.1 I 0.533
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.527
Cla009222 Citrullus lanatus Cla009222 I 0.527
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.527
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.519
30131.m007272 Ricinus communis 30131.m007272 I 0.514
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.506
OESDEN_24828 Oesophagostomum dentatum OESDEN_24828 N 0.501
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.491
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.491
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.489
Traes_7AL_959534EDB Triticum aestivum Traes_7AL_959534EDB I 0.488
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.488
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.488
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.488
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.486
MLOC_77667 Hordeum vulgare MLOC_77667 I 0.485
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.482
Bra026498 Brassica rapa Bra026498 I 0.481
Bo9g014140 Brassica oleracea Bo9g014140 I 0.481
scaffold_602413.1 Arabidopsis lyrata scaffold_602413.1 N 0.480
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.480
HMGB7 Arabidopsis thaliana AT5G23420 N 0.480
TCM_042534 Theobroma cacao TCM_042534 I 0.476
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.475
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.475
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.470
BRADI3G12920 Brachypodium distachyon BRADI3G12920 I 0.469
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.466
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.465
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.465
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.464
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.463
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.454
Pavir.Fb00026 Panicum virgatum Pavir.Fb00026 N 0.453
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.453
mgf009124m Mimulus guttatus mgf009124m N 0.452
ENSOGAG00000034481 Otolemur garnettii ENSOGAG00000034481 N 0.451
GF12460 Drosophila ananassae FBgn0089497 N 0.447
GD25013 Drosophila simulans FBgn0196325 N 0.447
Ssrp Drosophila melanogaster FBgn0010278 N 0.447
PPAI002521 Phlebotomus papatasi PPAI002521 N 0.445
LDEC020995 Leptinotarsa decemlineata LDEC020995 N 0.445
fgenesh1_pg.4_#_114 Coccomyxa subellipsoidea C169 fgenesh1_pg.4_#_114 N 0.445
fgeneshCV_pg.C_scaffold_4000123 Chlorella vulgaris fgeneshCV_pg.C_scaffold_4000123 N 0.445
HMEL015307 Heliconius melpomene HMEL015307 N 0.443
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.443
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.443
Pm026798 Prunus mume Pm026798 I 0.442
Bo8g070350 Brassica oleracea Bo8g070350 I 0.442
Bo7g061420 Brassica oleracea Bo7g061420 I 0.442
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.442
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.442
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.442
GJ21774 Drosophila virilis FBgn0208892 N 0.442
MDOA007633 Musca domestica MDOA007633 N 0.442
GE11532 Drosophila yakuba FBgn0229332 N 0.442
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.442
HMGB3 Arabidopsis thaliana AT1G20696 I 0.442
GG19998 Drosophila erecta FBgn0112197 N 0.442
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.442
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.442
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.442
GH21151 Drosophila grimshawi FBgn0128613 N 0.441
AAEL002381 Aedes aegypti AAEL002381 N 0.440
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.438
29669.m000844 Ricinus communis 29669.m000844 I 0.438
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.438
ENSOGAG00000026034 Otolemur garnettii ENSOGAG00000026034 I 0.438
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.438
mgf009330m Mimulus guttatus mgf009330m I 0.437
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.437
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.437
HCOI01912600 Haemonchus contortus HCOI01912600 I 0.437
Bra025838 Brassica rapa Bra025838 I 0.437
HCOI01913300 Haemonchus contortus HCOI01913300 I 0.437
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.436
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.436
BGIBMGA005288 Bombyx mori BGIBMGA005288 N 0.435
PK14705.1 Cannabis sativa PK14705.1 I 0.431
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.430
CpipJ_CPIJ020011 Culex pipiens CpipJ_CPIJ020011 I 0.430
MDP0000757111 Malus domestica MDP0000757111 I 0.430
MDP0000362980 Malus domestica MDP0000362980 I 0.430
CPIJ020011 Culex quinquefasciatus CPIJ020011 I 0.430
KGM_13851 Danaus plexippus KGM_13851 N 0.430
Pm018913 Prunus mume Pm018913 I 0.430
SPRG_10438 Saprolegnia parasitica SPRG_10438 N 0.429
MDP0000607529 Malus domestica MDP0000607529 I 0.427
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.425
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.425
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.425
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.425
mgf016608m Mimulus guttatus mgf016608m I 0.425
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.425
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.425
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.425
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.425
OB09G25530 Oryza brachyantha OB09G25530 I 0.425
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.425
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.425
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.425
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.425
Ca_09896 Cicer arietinum Ca_09896 I 0.425
Si031512m.g Setaria italica Si031512m.g I 0.425
mgf008076m Mimulus guttatus mgf008076m I 0.425
mgf006113m Mimulus guttatus mgf006113m I 0.425
mgf000913m Mimulus guttatus mgf000913m I 0.424
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.424
mgf014518m Mimulus guttatus mgf014518m I 0.424
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.424
Cflo_11824--XP_001120264.1_APIME Camponotus floridanus Cflo_11824--XP_001120264.1_APIME N 0.423
Hsal_00538--XP_001120264.1_APIME Harpegnathos saltator Hsal_00538--XP_001120264.1_APIME N 0.423
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.423
TCM_000068 Theobroma cacao TCM_000068 I 0.422
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.421
YQE_02071 Dendroctonus ponderosae YQE_02071 N 0.421
L798_13679 Zootermopsis nevadensis L798_13679 N 0.420
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.420
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.420
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.419
Cla009093 Citrullus lanatus Cla009093 I 0.419
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.419
Ca_05351 Cicer arietinum Ca_05351 I 0.419
OS09G0551600 Oryza sativa OS09G0551600 I 0.418
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.418
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.418
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.418
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.418
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.417
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.417
ACEP16621 Atta cephalotes ACEP16621 N 0.416
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.416
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.415
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.415