OBART01G25720 (Oryza barthii)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 OBART01G25720 T331564_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
OBART01G25720.1 Sox 50 119

Links

Other Sox family TFs
Other Oryza barthii TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.741
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.741
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.741
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.741
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.741
OS01G0666200 Oryza sativa OS01G0666200 N 0.741
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.739
OB01G34910 Oryza brachyantha OB01G34910 I 0.637
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.602
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.547
mgf009922m Mimulus guttatus mgf009922m N 0.539
Si003021m.g Setaria italica Si003021m.g N 0.539
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.538
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.537
F775_05073 Aegilops tauschii F775_05073 I 0.537
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.536
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.536
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.525
29693.m002035 Ricinus communis 29693.m002035 N 0.520
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.518
MDP0000695104 Malus domestica MDP0000695104 N 0.514
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.514
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.514
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.512
TCM_029514 Theobroma cacao TCM_029514 N 0.512
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.512
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.512
MDP0000143506 Malus domestica MDP0000143506 N 0.510
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.507
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.505
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.504
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.503
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.503
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.500
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.500
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.490
Ca_05164 Cicer arietinum Ca_05164 N 0.489
Ca_05162 Cicer arietinum Ca_05162 N 0.489
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.489
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.488
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.488
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.488
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.477
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.477
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.472
Bra021911 Brassica rapa Bra021911 N 0.470
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.470
Bo4g182600 Brassica oleracea Bo4g182600 N 0.470
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.466
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.465
PK22924.1 Cannabis sativa PK22924.1 N 0.449
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.444
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.433
MDP0000392251 Malus domestica MDP0000392251 N 0.425
MDP0000170945 Malus domestica MDP0000170945 N 0.425
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.424
HMGB5 Arabidopsis thaliana AT4G35570 I 0.423
OSTLU_19125 Ostreococcus lucimarinus OSTLU_19125 N 0.423
GUITHDRAFT_76406 Guillardia theta GUITHDRAFT_76406 N 0.423
GUITHDRAFT_114564 Guillardia theta GUITHDRAFT_114564 N 0.423
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.422
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.419