OBART04G21800 (Oryza barthii)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 OBART04G21800 T331572_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
OBART04G21800.1 Sox 25 81

Links

Other Sox family TFs
Other Oryza barthii TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_06533 Aegilops tauschii F775_06533 N 0.631
ANCCAN_02453 Ancylostoma caninum ANCCAN_02453 N 0.445
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.432
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.443
BRADI5G18460 Brachypodium distachyon BRADI5G18460 N 0.609
PK14705.1 Cannabis sativa PK14705.1 I 0.475
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.481
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.515
bbx Danio rerio ENSDARG00000012699 I 0.427
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.428
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.428
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.470
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.450
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.436
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.460
Hsal_18129--FBpp0074818_DROME Harpegnathos saltator Hsal_18129--FBpp0074818_DROME N 0.468
MLOC_57354 Hordeum vulgare MLOC_57354 N 0.510
MLOC_77667 Hordeum vulgare MLOC_77667 I 0.440
LPERR04G17840 Leersia perrieri LPERR04G17840 N 0.539
MTR_8g018100 Medicago truncatula MTR_8g018100 N 0.464
OESDEN_24828 Oesophagostomum dentatum OESDEN_24828 N 0.415
OBART08G00070 Oryza barthii OBART08G00070 I 0.420
OB04G28810 Oryza brachyantha OB04G28810 N 0.741
ORGLA04G0188600 Oryza glaberrima ORGLA04G0188600 N 0.741
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.420
OGLUM04G21840 Oryza glumaepatula OGLUM04G21840 N 0.741
BGIOSGA016928 Oryza indica BGIOSGA016928 N 0.741
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.420
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.420
OLONG_013579 Oryza longistaminata OLONG_013579 N 0.460
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.420
OMERI04G18350 Oryza meridionalis OMERI04G18350 N 0.741
ONIVA04G20340 Oryza nivara ONIVA04G20340 N 0.741
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.420
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.420
OPUNC04G19550 Oryza punctata OPUNC04G19550 N 0.735
ORUFI04G23400 Oryza rufipogon ORUFI04G23400 N 0.741
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.420
OS08G0101100 Oryza sativa OS08G0101100 I 0.420
OS04G0564600 Oryza sativa OS04G0564600 N 0.741
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.450
Pavir.Gb00881 Panicum virgatum Pavir.Gb00881 N 0.428
Pavir.Ga01019 Panicum virgatum Pavir.Ga01019 N 0.428
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.457
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.523
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.421
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.452
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.439
Si014434m.g Setaria italica Si014434m.g N 0.418
Si011290m.g Setaria italica Si011290m.g N 0.568
Si007288m.g Setaria italica Si007288m.g I 0.436
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.428
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.450
Sb06g025440 Sorghum bicolor Sb06g025440 N 0.417
SVUK_0000188101 Strongylus vulgaris SVUK_0000188101 N 0.445
ENSSSCG00000025539 Sus scrofa ENSSSCG00000025539 I 0.427
TELCIR_05566 Teladorsagia circumcincta TELCIR_05566 N 0.415
TCM_042534 Theobroma cacao TCM_042534 I 0.511
Traes_2DL_6CACFD720 Triticum aestivum Traes_2DL_6CACFD720 N 0.631
Traes_7AL_959534EDB Triticum aestivum Traes_7AL_959534EDB I 0.437
Traes_2AL_020BC1DF2 Triticum aestivum Traes_2AL_020BC1DF2 N 0.540
Traes_2BL_3EF023231 Triticum aestivum Traes_2BL_3EF023231 N 0.540
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.437
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.437
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.437
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.443
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.450
GRMZM2G144398 Zea mays GRMZM2G144398 N 0.421
AC186524.3_FG005 Zea mays AC186524.3_FG005 N 0.420
GRMZM2G145968 Zea mays GRMZM2G145968 N 0.428