OBART05G05520 (Oryza barthii)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 OBART05G05520 T331573_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
OBART05G05520.1 Sox 558 626

Links

Other Sox family TFs
Other Oryza barthii TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
OMERI05G05210 Oryza meridionalis OMERI05G05210 N 0.741
OLONG_012679 Oryza longistaminata OLONG_012679 N 0.741
OGLUM05G05400 Oryza glumaepatula OGLUM05G05400 N 0.741
ONIVA05G05990 Oryza nivara ONIVA05G05990 N 0.741
OPUNC05G05150 Oryza punctata OPUNC05G05150 N 0.741
SSRP1-B Oryza sativa OS05G0182600 N 0.741
ORUFI05G05850 Oryza rufipogon ORUFI05G05850 N 0.741
ORGLA05G0049600 Oryza glaberrima ORGLA05G0049600 N 0.741
LPERR05G04880 Leersia perrieri LPERR05G04880 N 0.741
OB05G15230 Oryza brachyantha OB05G15230 N 0.741
BGIOSGA019295 Oryza indica BGIOSGA019295 N 0.741
Traes_1AS_3FCB35E65 Triticum aestivum Traes_1AS_3FCB35E65 I 0.696
Traes_1DS_C7F1E9F38 Triticum aestivum Traes_1DS_C7F1E9F38 I 0.696
F775_29723 Aegilops tauschii F775_29723 I 0.696
Traes_1BS_15F9D276D Triticum aestivum Traes_1BS_15F9D276D I 0.696
GRMZM5G842484 Zea mays GRMZM5G842484 N 0.693
Sb09g005650 Sorghum bicolor Sb09g005650 N 0.693
Pavir.Ca01033 Panicum virgatum Pavir.Ca01033 N 0.686
MLOC_27773 Hordeum vulgare MLOC_27773 I 0.686
Pavir.J20558 Panicum virgatum Pavir.J20558 N 0.686
BRADI2G33580 Brachypodium distachyon BRADI2G33580 N 0.684
Si021575m.g Setaria italica Si021575m.g N 0.680
LPERR01G05200 Leersia perrieri LPERR01G05200 N 0.643
OB01G15440 Oryza brachyantha OB01G15440 N 0.643
ORGLA01G0051500 Oryza glaberrima ORGLA01G0051500 N 0.637
ONIVA01G06280 Oryza nivara ONIVA01G06280 N 0.637
SSRP1-A Oryza sativa OS01G0184900 N 0.637
BGIOSGA002908 Oryza indica BGIOSGA002908 N 0.637
ORUFI01G05970 Oryza rufipogon ORUFI01G05970 N 0.637
OLONG_023518 Oryza longistaminata OLONG_023518 N 0.637
OMERI01G05760 Oryza meridionalis OMERI01G05760 N 0.637
OBART01G05540 Oryza barthii OBART01G05540 N 0.637
OGLUM01G06010 Oryza glumaepatula OGLUM01G06010 N 0.637
Si000646m.g Setaria italica Si000646m.g N 0.635
GRMZM2G032252 Zea mays GRMZM2G032252 N 0.635
Pavir.J08546 Panicum virgatum Pavir.J08546 N 0.635
Pavir.Ea00282 Panicum virgatum Pavir.Ea00282 N 0.635
Sb03g003450 Sorghum bicolor Sb03g003450 N 0.635
TRAES3BF096800150CFD_g Triticum aestivum TRAES3BF096800150CFD_g N 0.618
TRIUR3_14091 Triticum urartu TRIUR3_14091 N 0.618
Traes_3AS_AAAAD30B5 Triticum aestivum Traes_3AS_AAAAD30B5 N 0.618
F775_28104 Aegilops tauschii F775_28104 N 0.618
Pavir.J10741 Panicum virgatum Pavir.J10741 N 0.603
Si024096m.g Setaria italica Si024096m.g N 0.602
MLOC_6673 Hordeum vulgare MLOC_6673 N 0.599
OPUNC01G05380 Oryza punctata OPUNC01G05380 N 0.586
OPUNC02G20230 Oryza punctata OPUNC02G20230 N 0.586
mgf024995m Mimulus guttatus mgf024995m I 0.478
SELMODRAFT_166865 Selaginella moellendorffii SELMODRAFT_166865 I 0.445
SELMODRAFT_159743 Selaginella moellendorffii SELMODRAFT_159743 I 0.445
MBM_02410 Marssonina brunnea MBM_02410 I 0.424
M7I_1578 Glarea lozoyensis M7I_1578 I 0.424
PDK_20s1437671g003 Phoenix dactylifera PDK_20s1437671g003 I 0.419
PV08_04655 Exophiala spinifera PV08_04655 I 0.417
A1O7_01726 Cladophialophora yegresii A1O7_01726 I 0.417
A1O1_01197 Capronia coronata A1O1_01197 I 0.417
PV05_09944 Exophiala xenobiotica PV05_09944 I 0.417
A1O3_08778 Capronia epimyces A1O3_08778 I 0.417
Z518_04911 Rhinocladiella mackenziei Z518_04911 I 0.417
PV06_04154 Exophiala oligosperma PV06_04154 I 0.417
G647_10093 Cladophialophora carrionii G647_10093 I 0.417
PV11_09703 Exophiala sideris PV11_09703 I 0.417
HMPREF1120_00213 Exophiala dermatitidis HMPREF1120_00213 I 0.417
CPUR_04901 Claviceps purpurea CPUR_04901 I 0.416
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.415
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.415