OGLUM02G27900 (Oryza glumaepatula)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 OGLUM02G27900 T331591_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
OGLUM02G27900.1 Sox 33 102

Links

Other Sox family TFs
Other Oryza glumaepatula TFs

210 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ORUFI02G28820 Oryza rufipogon ORUFI02G28820 N 0.741
OS02G0670400 Oryza sativa OS02G0670400 N 0.741
OPUNC02G25020 Oryza punctata OPUNC02G25020 N 0.741
ONIVA02G29880 Oryza nivara ONIVA02G29880 N 0.741
OMERI02G26620 Oryza meridionalis OMERI02G26620 N 0.741
OBART02G27340 Oryza barthii OBART02G27340 N 0.741
BGIOSGA008782 Oryza indica BGIOSGA008782 N 0.741
OB02G34710 Oryza brachyantha OB02G34710 N 0.741
BRADI3G51140 Brachypodium distachyon BRADI3G51140 N 0.737
LPERR02G22240 Leersia perrieri LPERR02G22240 N 0.729
GRMZM2G013821 Zea mays GRMZM2G013821 N 0.724
Si018635m.g Setaria italica Si018635m.g N 0.722
Pavir.J40489 Panicum virgatum Pavir.J40489 N 0.699
Pavir.J38684 Panicum virgatum Pavir.J38684 N 0.699
Sb04g032180 Sorghum bicolor Sb04g032180 N 0.691
TRIUR3_34670 Triticum urartu TRIUR3_34670 I 0.672
Traes_6DL_E5B5F44FC Triticum aestivum Traes_6DL_E5B5F44FC I 0.672
Traes_6BL_017F7FCF8 Triticum aestivum Traes_6BL_017F7FCF8 I 0.672
Traes_6AL_9EC9874F1 Triticum aestivum Traes_6AL_9EC9874F1 I 0.672
F775_30706 Aegilops tauschii F775_30706 I 0.672
GRMZM2G156785 Zea mays GRMZM2G156785 N 0.660
GSMUA_Achr5G11630_001 Musa acuminata GSMUA_Achr5G11630_001 I 0.632
MLOC_57633 Hordeum vulgare MLOC_57633 I 0.617
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.597
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.544
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.534
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.513
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.513
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.511
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.508
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.507
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.507
OLONG_000335 Oryza longistaminata OLONG_000335 N 0.505
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.501
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.501
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.500
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.500
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.498
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.495
Bo5g030580 Brassica oleracea Bo5g030580 I 0.494
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.492
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.491
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.490
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.490
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.490
TCM_034406 Theobroma cacao TCM_034406 I 0.490
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.490
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.490
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.490
30170.m014386 Ricinus communis 30170.m014386 I 0.490
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.490
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.490
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.490
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.490
Cla009093 Citrullus lanatus Cla009093 I 0.490
MDP0000275042 Malus domestica MDP0000275042 I 0.490
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.490
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.490
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.490
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.490
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.490
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.490
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.490
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.488
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.481
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.480
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.480
MDP0000757111 Malus domestica MDP0000757111 I 0.480
MDP0000362980 Malus domestica MDP0000362980 I 0.480
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.480
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.480
Pm018913 Prunus mume Pm018913 I 0.480
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.480
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.480
29669.m000844 Ricinus communis 29669.m000844 I 0.478
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.477
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.474
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.474
TCM_000068 Theobroma cacao TCM_000068 I 0.473
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.470
Cla018386 Citrullus lanatus Cla018386 I 0.470
Bo8g070350 Brassica oleracea Bo8g070350 I 0.469
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.469
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.469
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.469
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.469
Bo7g061420 Brassica oleracea Bo7g061420 I 0.469
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.468
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.468
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.468
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.468
OB06G35870 Oryza brachyantha OB06G35870 I 0.468
F775_27510 Aegilops tauschii F775_27510 I 0.468
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.468
TCM_042534 Theobroma cacao TCM_042534 I 0.467
Bra025838 Brassica rapa Bra025838 I 0.467
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.466
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.466
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.464
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.464
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.464
TCM_021706 Theobroma cacao TCM_021706 I 0.464
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.464
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.463
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.463
OS06G0728000 Oryza sativa OS06G0728000 I 0.461
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.461
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.461
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.461
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.461
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.461
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.461
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.461
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.461
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.461
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.461
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.461
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.461
Pm026798 Prunus mume Pm026798 I 0.461
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.461
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.461
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.461
OBART06G28090 Oryza barthii OBART06G28090 I 0.461
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.461
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.461
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.461
Si031512m.g Setaria italica Si031512m.g I 0.461
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.461
HMGB3 Arabidopsis thaliana AT1G20696 I 0.461
Si007288m.g Setaria italica Si007288m.g I 0.461
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.461
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.461
PK11149.1 Cannabis sativa PK11149.1 I 0.457
mgf009330m Mimulus guttatus mgf009330m I 0.456
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.454
mgf014518m Mimulus guttatus mgf014518m I 0.452
MDP0000607529 Malus domestica MDP0000607529 I 0.452
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.451
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.451
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.451
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.451
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.449
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.449
Ca_09896 Cicer arietinum Ca_09896 I 0.448
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.447
Pm002934 Prunus mume Pm002934 I 0.447
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.444
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.443
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.443
mgf006113m Mimulus guttatus mgf006113m I 0.440
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.440
mgf016608m Mimulus guttatus mgf016608m I 0.440
mgf008076m Mimulus guttatus mgf008076m I 0.440
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.439
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.437
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.437
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.437
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.437
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.437
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.437
Cla023817 Citrullus lanatus Cla023817 I 0.437
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.437
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.437
Ca_10725 Cicer arietinum Ca_10725 I 0.436
GRMZM2G144398 Zea mays GRMZM2G144398 N 0.434
AC186524.3_FG005 Zea mays AC186524.3_FG005 N 0.433
mgf000913m Mimulus guttatus mgf000913m I 0.433
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.432
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.432
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.432
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.432
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.432
OB09G25530 Oryza brachyantha OB09G25530 I 0.432
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.431
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.431
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.430
mgf016363m Mimulus guttatus mgf016363m I 0.430
Ca_19340 Cicer arietinum Ca_19340 I 0.430
PK29786.1 Cannabis sativa PK29786.1 I 0.430
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.428
OS09G0551600 Oryza sativa OS09G0551600 I 0.425
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.425
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.425
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.425
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.425
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.425
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.422
Bra037266 Brassica rapa Bra037266 I 0.422
Bo7g014280 Brassica oleracea Bo7g014280 I 0.422
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.421
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.420
Pavir.Ga01019 Panicum virgatum Pavir.Ga01019 N 0.419
Pavir.Gb00881 Panicum virgatum Pavir.Gb00881 N 0.419
GRMZM2G145968 Zea mays GRMZM2G145968 N 0.418
SNAPOd2T00000370001 Oikopleura dioica SNAPOd2T00000370001 N 0.418
HMGB2 Arabidopsis thaliana AT1G20693 I 0.418
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.418
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.418
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.418
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.418
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.418
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.418
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.418
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.418
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.418
HMGB4 Arabidopsis thaliana AT2G17560 I 0.416
OESDEN_24828 Oesophagostomum dentatum OESDEN_24828 N 0.415
HCOI01913300 Haemonchus contortus HCOI01913300 I 0.415
HCOI01912600 Haemonchus contortus HCOI01912600 I 0.415
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.415